BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948686

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44345.1 | Symbols:  | F-box associated ubiquitination effec...   215    5e-55


> AT5G44345.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr5:17862113-17863079 FORWARD LENGTH=546
Length=546

 Score =  215 bits (116),  Expect = 5e-55
 Identities = 141/153 (92%), Gaps = 1/153 (1%)
 Strand=Plus/Plus

Query  448  GAAGGGG-TGCTTACTTACGCTTTGTTGGAGTGACTCATACAAATGAAATTGTGTTGGCG  506
            ||||||| ||||||||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct  391  GAAGGGGATGCTTACTTACGCCTTGTTGGAGTGACTCAGAGAAATGAAATTGTGTTGGCG  450

Query  507  TCGTCCTTTATTGTGCCTTTCGACCTCTTCTACTACAATATGGAGAAAAAGACAATCATA  566
             ||| || |  |||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct  451  ACGTGCTATGCTGTGCCTTTCTACCTCTTCTACTACAATATGGAGAGAAAGACAATCATA  510

Query  567  AGACTTCAAATCCAAGGAATGGAAGATTTTCCT  599
            ||||||||||||||||||||||||| |||||||
Sbjct  511  AGACTTCAAATCCAAGGAATGGAAGTTTTTCCT  543



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31446576022


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5