BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948689 Length=1815 Score E Sequences producing significant alignments: (Bits) Value AT5G44320.1 | Symbols: | Eukaryotic translation initiation fac... 2950 0.0 AT4G20980.1 | Symbols: | Eukaryotic translation initiation fac... 1740 0.0 > AT5G44320.1 | Symbols: | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) | chr5:17854589-17856680 REVERSE LENGTH=2092 Length=2092 Score = 2950 bits (1597), Expect = 0.0 Identities = 1729/1794 (96%), Gaps = 3/1794 (0%) Strand=Plus/Plus Query 24 CAACAATGGTGTTCGAAGCATTCGAAGTAGGCACAGTCCCATTCAATTCCGATGGTTGGG 83 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 9 CAACAATGGTGTTTGAAGCATTCGAAGTCGGCACAGTCCCATTCAATTCCGATGGTTGGG 68 Query 84 GACCTCCAGATGCTTCCGACACTTCCTCCACCAGCGTCGCGGCGGCGAATCTCCTCCCAA 143 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69 GACCACCAGATGCTTCCGACACTTCCTCCACCAGCGTCGCGGCGGCGAATCTCCTCCCAA 128 Query 144 ACGTCCCTTTCGCTTCCTTCTCACGTTCTGAAAAACTCGGACGCGTCGCTGATTGGACAC 203 ||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| | Sbjct 129 ACGTCCCCTTCGCTTCCTTCTCACGATCCGAAAAACTCGGACGCGTTGCTGATTGGACTC 188 Query 204 GAGCTCTCTCAAATCCATCAGCTCGTCCTCACACCGGATCCAAATCAGATCCATCAGCAA 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 189 GAGCTCTCTCAAATCCATCAGCTCGTCCTCACACCGGATCCAAATCAGATCCATCAGCGA 248 Query 264 TCTTCGATTTCTCAGCTTTTGCAGTAGATGAAGGATTTGGTCTAACTAATTCCGGTGGAA 323 |||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| Sbjct 249 TCTTCGATTTCTCAGCTTTTGCAGTAGATGAAGGATTTGGTCTAACAAACTCAGGTGGAA 308 Query 324 ACGCCGACGAAGACGCAGCTTTCCGATTAGTCGACGGTAAACCACCGCCGCGTCCTAAAT 383 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 309 ACGCCGACGAAGACGCCGCTTTCCGATTAGTCGACGGAAAACCACCGCCGCGTCCTAAAT 368 Query 384 TCGGACCTAAATGGAGATTTAATCAATACCATAACCGTAATCAGCTTCCTCAACGTCGTG 443 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 369 TCGGACCTAAATGGAGATTCAATCAATACCATAACCGAAATCAGCTTCCTCAACGTCGTG 428 Query 444 ATGAAGAAGTTGAAGCTAAGAAACGTGAAGCTGAGAAAGATCGAGCTCGTCGTGATCGTC 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 429 ATGAAGAAGTTGAAGCTAAGAAACGTGAAGCTGAGAAAGATCGAGCTCGTCGTGATCGTC 488 Query 504 TTTATAATAATAACCGTAACAATATTCATCAGCAACGTCGTGAAGCCGCGGCGTTTAAAT 563 | || ||||| || ||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 489 TCTACAATAACAATCGTAACAATATTCATCAGCAACGCCGTGAAGCCGCCGCGTTTAAAT 548 Query 564 CATCAGTTGATATTCAACCGGAATGGAATATGCTTGAGCAGATTCCTTTTTCGACTTTCT 623 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 549 CATCAGTTGATATTCAACCGGAATGGAATATGCTTGAGCAGATTCCGTTTTCGACTTTCT 608 Query 624 CGAAGCTTTCGTTTACAG-TTCAAGAACCTGAAGATCTTCTTCTTTGTGGTGGACTTGAG 682 | |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 609 CTAAGCTTTCGTTTACAGTTTC-TGAACCTGAAGATCTTCTTCTTTGTGGTGGACTTGAG 667 Query 683 TCTTATGATCGGAGTTATGATCGTATTACACCTAAAGCTGATCGTAGACTTGAGCGTTTC 742 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 668 TCTTATGATCGGAGTTTTGATCGTATTACTCCTAAAGCTGATCGTAGACTTGAGCGTTTC 727 Query 743 AAGAACAGGAGCTTTAAGGTTACTACAAGTGATGATCTTGTGATTAGACGTCTCGCTAAG 802 |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 728 AAGAACAGAAGCTTTAAGGTTACTACAAGTGATGATCTTGTGATCAGACGTCTTGCTAAA 787 Query 803 GAAGATAAAGCTACTGTTTTTGCTACTGATGCTATTCTTGCTGCTCTTATGTGTGCTCCT 862 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 788 GAAGATAAAGCTACTGTTTTTGCTACTGATGCTATTCTAGCTGCTCTTATGTGTGCTCCT 847 Query 863 AGATCGGTTTATTCATGGGATCTTGTGATTCAACGTGTTGGGAATAAGCTTTTCTTTGAT 922 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 848 AGATCGGTTTATTCATGGGATCTTGTGATTCAACGTGTTGGGAATAAGCTTTTCTTTGAT 907 Query 923 AAGAGAGATGGGTCGCCGCTAGATTTGTTGTCTGTTCATGAAACGTCTCAAGAGCCTTTG 982 |||||||||||||| ||||| |||||||| ||||||||||| || ||||||||||||||| Sbjct 908 AAGAGAGATGGGTCACCGCTTGATTTGTTATCTGTTCATGAGACTTCTCAAGAGCCTTTG 967 Query 983 CCTGAAGCTAAAGATGATATTAACTCTGCTCATTCTCTAGGTGTGGAGGCTGCTTATATT 1042 ||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 968 CCTGAGGGTAAAGATGATATTAACTCTGCTCATTCTCTAGGTCTGGAGGCTGCTTATATT 1027 Query 1043 AATCAGAATTTTGCTCAGCAGGTTTTGGTTAGGAATGGAAAAAGGGTAACTTTTGATGAG 1102 ||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| Sbjct 1028 AATCAGAATTTTGCTCAGCAGGTTTTGGTTAAGAATGGGAAAAGGGAAACTTTTGATGAG 1087 Query 1103 CCGATTCCGAATGTTAATGAAGGTGAAGAGAATGCTTCTATTGCTTATAGGTATAGGAGA 1162 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1088 CCAATTCCTAATGTTAATGAAGGTGAAGAGAATGCTTCTATTGCTTATAGGTATAGGAGA 1147 Query 1163 TGGAAGCTTGATGATAGTATGTATCTAGTTGCTAGGTGTGAGTTACAGAGCACTGTTGAT 1222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1148 TGGAAGCTTGATGATAGTATGTATCTAGTTGCTAGGTGTGAGTTACAGAGCACTGTTGAT 1207 Query 1223 TTGAATAACCAGAGATCATTCTTAACTTTGAATGCTCTTAACGAGTTTGATCCTAAGTAC 1282 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 1208 TTGAATAACCAGAGATCGTTTTTAACTTTGAATGCTCTTAACGAGTTTGATCCTAAGTAC 1267 Query 1283 TCTGGTGTTGATTGGAGACAGAAGCTCGAGACTCAGAGAGGTGCGGTTTTAGCTAATGAG 1342 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1268 TCTGGTGTTGATTGGAGACAGAAGCTTGAGACTCAGAGAGGTGCGGTTTTAGCTAATGAG 1327 Query 1343 TTGAAGAACAATGGTAATAAGTTAGCTAAATGGACCGCACAGGCCCTCTTGGCTAATGCG 1402 ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| Sbjct 1328 TTGAAGAACAATGGTAATAAGTTAGCTAAATGGACTGCGCAGGCTCTCTTGGCTAATGCG 1387 Query 1403 GATATGATGAAGATTGGGTTTGTTTCGAGGGTTCATCCTCGTGATCATTTTAACCATGTT 1462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1388 GATATGATGAAGATTGGGTTTGTTTCGAGGGTTCATCCTCGTGATCATTTTAACCATGTT 1447 Query 1463 ATATTATCGGTTTTGGGGTATAAGCCGAAGGATTTCGCTGGGCAGATTAATCTGAACACT 1522 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1448 ATATTATCGGTTTTGGGGTATAAGCCGAAAGATTTCGCTGGGCAGATCAATCTGAACACT 1507 Query 1523 AACAACATGTGGGGAATTGTGAAGTCGATTGTTGATCTGTGTATGAAGTTAAGTGAAGGA 1582 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1508 AACAATATGTGGGGAATTGTGAAGTCGATTGTTGATCTGTGTATGAAGTTAAGTGAAGGA 1567 Query 1583 AAGTATGTTCTAGTGAAGGATCCATCGAAGCCTCAAGTTAGGATTTACGAAGTTCCAGCT 1642 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1568 AAGTATGTTCTAGTGAAGGATCCATCGAAGCCTCAAGTTAGGATTTACGAAGTTCCGGCT 1627 Query 1643 GATGCTTTTGACAATGATTATGTGGAGGAGCCTCTCCCTGAGGATGAACAGGTTCAGCCA 1702 ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 1628 GATGCATTTGACAATGATTATGTGGAGGAGCCACTCCCTGAAGATGAACAGGTTCAGCCA 1687 Query 1703 CCTGAGGAGAACACTGATGCAGGAGCAGAGACTAATGGTGCTTCCTCTACTAATGTAGCT 1762 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 1688 CCTGAGGAGAACACTGATGCAGGAGCAGAGACTAATGGGGTTTCCTCTACTAATGTAGCT 1747 Query 1763 GCAGAGGATAAGAAATCCGAAGCTGAAGCCTGATTT-GATGATATGGGTATATT 1815 | |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 1748 GTAGAGGATAAGAAATCCGAAGTTGAAGCCTGATTTTGATGATATGGGTATATT 1801 > AT4G20980.1 | Symbols: | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) | chr4:11216931-11219337 FORWARD LENGTH=2126 Length=2126 Score = 1740 bits (942), Expect = 0.0 Identities = 1477/1730 (85%), Gaps = 58/1730 (3%) Strand=Plus/Plus Query 37 CGAAGCATTCGAAGTAGGCACAGTCCCATTCAATTCCGATGGTTGGGGACCTCCAGATGC 96 |||||| |||||| | | | | || || |||||||||||||| |||||||||||||| || Sbjct 75 CGAAGCTTTCGAATTCGTCGCCGTTCCTTTCAATTCCGATGGCTGGGGACCTCCAGACGC 134 Query 97 TTCCGAC----ACT--T----C-CT-CCACCAGCGTCGCGGCGGCGAATCTCCTCCCAAA 144 ||||||| || | | || ||||||||||||| || || ||||| ||||| || Sbjct 135 TTCCGACGTTTCCTCCTCCGCCTCTCCCACCAGCGTCGCCGCCGCTAATCTTCTCCCGAA 194 Query 145 CGTCCCTTTCGCTTCCTTCTCACGTTCTGAAAAACTCGGACGCGTCGCTGATTGGACACG 204 ||| ||||||||||||||||| ||||| || || ||||| || || ||||||||||| || Sbjct 195 CGTTCCTTTCGCTTCCTTCTCCCGTTCCGATAAGCTCGGCCGTGTAGCTGATTGGACTCG 254 Query 205 -AGCTCTCTCAAATCCATCAGCTCGTCCTCACACCGGATCCAAATCAGATCCATCAGCAA 263 | |||||| |||||||| ||||||||| |||||||||||||||||||||| || ||| Sbjct 255 CA-ATCTCTCTAATCCATCCGCTCGTCCTAACACCGGATCCAAATCAGATCCGTCTGCAG 313 Query 264 TCTTCGATTTCTCAGCTTTTGCAGTAGATGAAGGATTTGGTCTAACTAATTCCGGTGG-A 322 | ||||||||||| ||||| ||| | || ||||| || ||||| || |||||||| | Sbjct 314 TTTTCGATTTCTCCGCTTTCGCAATCGACGAAGGCTTCGGTCTCGCTTCCTCCGGTGGTA 373 Query 323 AACGCCGACGAAGACGCAGCTTTCCGAT-TAGTCGACGGTAAACCACCGCCGCGTCCTAA 381 | | |||||||||||||||||||||| | | |||||||||||||| |||||||||||||| Sbjct 374 ATC-CCGACGAAGACGCAGCTTTCCG-TCTCGTCGACGGTAAACCTCCGCCGCGTCCTAA 431 Query 382 ATTCGGACCTAAATGGAGATTT-AATCAAT-ACCATAACCGTAATCAGCTTCCTCAACGT 439 |||||||||||||||| | ||| |||| | |||| || || ||||||||||||||||| Sbjct 432 ATTCGGACCTAAATGGCG-TTTCAATC-CTCACCACAATCGGAATCAGCTTCCTCAACGG 489 Query 440 CGTGATGAAGAAGTTGAAGCTAAGAAACGTGAAGCTGAGAAAGATCGAGCTCGTCGTGAT 499 || ||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||| Sbjct 490 CGAGATGAAGAAGTTGAAGCTAAGAAGCGTGATGCTGAGAAGGAACGAGCTCGTCGTGAT 549 Query 500 CGTCTTTATAATAATAACCGTAACAATATTCATCAGCAACGTCGTGAAGCCGCGGCGTTT 559 ||||| || ||||| ||||||||||| || ||||| ||||| |||||||| || || ||| Sbjct 550 CGTCTCTACAATAACAACCGTAACAACATCCATCACCAACGCCGTGAAGCTGCCGC-TTT 608 Query 560 -AAATCATCAGTTGATATTCAACCGGAATGGAATATGCTTGAGCAGATTCCTTTTTCGAC 618 |||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||| || || Sbjct 609 CAAATCATCCGTTGATATTCAGCCGGAGTGGAACATGCTTGAGCAGATCCCTTTCTCAAC 668 Query 619 TTTCTCGAAGCTTTCGTTTACAGTTCAAGAACCTGAAGATCTTCTTCTTTGTGGTGGACT 678 ||||||||||| |||| |||||||||||||| |||||||||||||| |||||||| || Sbjct 669 ATTCTCGAAGCTCTCGTACACAGTTCAAGAACCAGAAGATCTTCTTCTCTGTGGTGGCCT 728 Query 679 TGAGT-CTTATGATCGGAGTTAT-GATCGTATTACACC-TAAAGCTGATCGTAGACTTGA 735 ||||| | || | | | || | ||||| || || || ||| | || || ||||| || Sbjct 729 TGAGTAC-TA-CAACCGCCTTTTCGATCGCATAACGCCGAAAAAC-GAACGCAGACTCGA 785 Query 736 GCGTTTCAAGAACAGGAGC-T-TT-AAGGTTACTACAAGTGATGATCTTGTGATTAGACG 792 ||||||||||||||||| | | || || || ||||| |||||||||| ||||||||| || Sbjct 786 GCGTTTCAAGAACAGGAACTTCTTCAAAGTCACTACTAGTGATGATCCTGTGATTAGGCG 845 Query 793 TCTCGCTAAGGAAGATAAAGCTACTGTTTTTGCTACTGATGCTATTCTT-GCTGCTCTTA 851 | | ||||||||||| |||||||||||||| ||||||||||||| | || |||||||||| Sbjct 846 TTTAGCTAAGGAAGACAAAGCTACTGTTTTCGCTACTGATGCTA-TATTAGCTGCTCTTA 904 Query 852 TGTGTGCTCCTAGATCGGTTTATTCATGGGATCTTGTGATTCAACGTGTTGGGAATAAGC 911 |||||||||||||||| ||||| || |||||| |||| |||||||||||||| || || | Sbjct 905 TGTGTGCTCCTAGATCTGTTTACTCTTGGGATATTGTTATTCAACGTGTTGGTAACAAAC 964 Query 912 TTTTCTTTGATAAGAGAGATGGGTCGCCGCTAGATTTGTTGTCTGTTCATGAAACGTCTC 971 | |||||||| ||||||||||| || | ||| |||||||||||||| ||||| || |||| Sbjct 965 TGTTCTTTGACAAGAGAGATGGATCACAGCTTGATTTGTTGTCTGTGCATGAGACATCTC 1024 Query 972 AAGAGCCTTTGCCTGAAG-CTAAAGATGATATTAACTCTGCTCATTCTCTAGGTGTGGAG 1030 ||||||| ||||||| || ||||||||||||| || ||||||||||||||||||||||| Sbjct 1025 AAGAGCCATTGCCTG-AGTCTAAAGATGATATCAATTCTGCTCATTCTCTAGGTGTGGAA 1083 Query 1031 GCTGCTTATATTAATCAGAA-TTTTGCTCAGCAGGTTTTGGTTAGGA-ATGGAAA-AAGG 1087 |||||||| || |||||||| |||| | |||||||||||||||| || ||||||| || | Sbjct 1084 GCTGCTTACATCAATCAGAACTTTT-CGCAGCAGGTTTTGGTTA-GAGATGGAAAGAA-G 1140 Query 1088 GTAACTTTTGATG-AGCCGATTCCGA-ATGTTAATGAAGGTGAAGAGAATGCTTCTATTG 1145 | ||||||||||| |||| | ||| | || ||||||||||||||||| ||||||| ||| Sbjct 1141 GAAACTTTTGATGAAGCC-AATCC-ATTTGCTAATGAAGGTGAAGAGATTGCTTCTGTTG 1198 Query 1146 CTTATAGGTATAGGAGATGGAAGCTTGATGATAGTATGTATCTAGTTGCTAGGTGTGAGT 1205 ||||||||||||| || |||||||||||||||| |||| |||| ||||| |||||||||| Sbjct 1199 CTTATAGGTATAGAAGGTGGAAGCTTGATGATAATATGCATCTTGTTGCGAGGTGTGAGT 1258 Query 1206 TACAGAGCACTGTTGATTTGAATAACCAGAGATC-ATTCTTAACTTTGAATGCTCTTAAC 1264 ||||||| || |||| | || ||||| || || ||||| |||||||||||||||||| Sbjct 1259 TACAGAGTGTTGCTGATCTCAACAACCAAAGGTCGTTTCTT-ACTTTGAATGCTCTTAAC 1317 Query 1265 GAGTTTGATCCTAAGTACTCTGGTGTTGATTGGAGACAGAAGCTCGAGACTCAGAGAGGT 1324 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1318 GAGTTTGATCCTAAGTACTCTGGTGTTGATTGGAGACAGAAGCTTGAAACTCAGAGAGGT 1377 Query 1325 GCGGTTTTAGCTA-ATGAGTTGAAGAACAATGGTAATAAGTTAGCTAAATGGACCGCACA 1383 ||||||||||||| | || |||||||||||||| |||||||| ||||||||||| ||||| Sbjct 1378 GCGGTTTTAGCTACA-GAATTGAAGAACAATGGAAATAAGTTGGCTAAATGGACTGCACA 1436 Query 1384 GGCCCTCTTGGCTAATGCGGATATGATGAAGATTGGGTTTGTTTCGAGGGTTCATCCTCG 1443 || | ||||||||||| ||||||||||||||||| ||||| || |||||||||||||| Sbjct 1437 AGCTTTATTGGCTAATGCTGATATGATGAAGATTGGTTTTGTCTCTAGGGTTCATCCTCG 1496 Query 1444 TGATCATTTTAACCATGTTATATTATCGGTTTTGGGGTATAAGCCGAAGGATTTCGCTGG 1503 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1497 TGATCATTTCAACCATGTTATATTATCTGTTTTGGGGTATAAGCCGAAGGATTTCGCTGG 1556 Query 1504 GCAGATTAATCTGAACACTAAC-AACATGTGGGGAATTGTGAAGTCGATTGTTGATCTGT 1562 ||||||||||| |||||| | ||||||||||| |||||||| || || |||||||||| Sbjct 1557 ACAGATTAATCTCAACACTT-CTAACATGTGGGGGATTGTGAAATCCATAGTTGATCTGT 1615 Query 1563 GTATGAAGTTAAGTGAAGGAAAGTATGTTCTAGTGAAGGATCCATCGAAGCCTCAAGTTA 1622 ||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||||| | Sbjct 1616 GTATGAAACTAAGCGAAGGGAAGTATGTTCTTGTGAAGGATCCATCGAAGCCTCAAGTGA 1675 Query 1623 GGATTTACGAAGTTCCAGCTGATGCTTTTGACAATGATTATGTGGAGGAGCC-TCTCCCT 1681 ||||||| || |||||| |||||||||| || |||||||| || ||||| || | | ||| Sbjct 1676 GGATTTATGAGGTTCCACCTGATGCTTTCGAGAATGATTACGTTGAGGAACCGT-TGCCT 1734 Query 1682 GAGGATGAACAGGTTCAGCCACCTGAGGAGAACACTGATGCAGGAGCAGA 1731 || |||||||||||||||||| ||||||| ||||| || | |||||||| Sbjct 1735 GAAGATGAACAGGTTCAGCCAACTGAGGAAAACACAGA-G--GGAGCAGA 1781 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89808775005 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5