BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948689
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44320.1 | Symbols: | Eukaryotic translation initiation fac... 2950 0.0
AT4G20980.1 | Symbols: | Eukaryotic translation initiation fac... 1740 0.0
> AT5G44320.1 | Symbols: | Eukaryotic translation initiation factor
3 subunit 7 (eIF-3) | chr5:17854589-17856680 REVERSE LENGTH=2092
Length=2092
Score = 2950 bits (1597), Expect = 0.0
Identities = 1729/1794 (96%), Gaps = 3/1794 (0%)
Strand=Plus/Plus
Query 24 CAACAATGGTGTTCGAAGCATTCGAAGTAGGCACAGTCCCATTCAATTCCGATGGTTGGG 83
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 9 CAACAATGGTGTTTGAAGCATTCGAAGTCGGCACAGTCCCATTCAATTCCGATGGTTGGG 68
Query 84 GACCTCCAGATGCTTCCGACACTTCCTCCACCAGCGTCGCGGCGGCGAATCTCCTCCCAA 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 GACCACCAGATGCTTCCGACACTTCCTCCACCAGCGTCGCGGCGGCGAATCTCCTCCCAA 128
Query 144 ACGTCCCTTTCGCTTCCTTCTCACGTTCTGAAAAACTCGGACGCGTCGCTGATTGGACAC 203
||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| |
Sbjct 129 ACGTCCCCTTCGCTTCCTTCTCACGATCCGAAAAACTCGGACGCGTTGCTGATTGGACTC 188
Query 204 GAGCTCTCTCAAATCCATCAGCTCGTCCTCACACCGGATCCAAATCAGATCCATCAGCAA 263
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 189 GAGCTCTCTCAAATCCATCAGCTCGTCCTCACACCGGATCCAAATCAGATCCATCAGCGA 248
Query 264 TCTTCGATTTCTCAGCTTTTGCAGTAGATGAAGGATTTGGTCTAACTAATTCCGGTGGAA 323
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 249 TCTTCGATTTCTCAGCTTTTGCAGTAGATGAAGGATTTGGTCTAACAAACTCAGGTGGAA 308
Query 324 ACGCCGACGAAGACGCAGCTTTCCGATTAGTCGACGGTAAACCACCGCCGCGTCCTAAAT 383
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 309 ACGCCGACGAAGACGCCGCTTTCCGATTAGTCGACGGAAAACCACCGCCGCGTCCTAAAT 368
Query 384 TCGGACCTAAATGGAGATTTAATCAATACCATAACCGTAATCAGCTTCCTCAACGTCGTG 443
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 369 TCGGACCTAAATGGAGATTCAATCAATACCATAACCGAAATCAGCTTCCTCAACGTCGTG 428
Query 444 ATGAAGAAGTTGAAGCTAAGAAACGTGAAGCTGAGAAAGATCGAGCTCGTCGTGATCGTC 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ATGAAGAAGTTGAAGCTAAGAAACGTGAAGCTGAGAAAGATCGAGCTCGTCGTGATCGTC 488
Query 504 TTTATAATAATAACCGTAACAATATTCATCAGCAACGTCGTGAAGCCGCGGCGTTTAAAT 563
| || ||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 489 TCTACAATAACAATCGTAACAATATTCATCAGCAACGCCGTGAAGCCGCCGCGTTTAAAT 548
Query 564 CATCAGTTGATATTCAACCGGAATGGAATATGCTTGAGCAGATTCCTTTTTCGACTTTCT 623
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 549 CATCAGTTGATATTCAACCGGAATGGAATATGCTTGAGCAGATTCCGTTTTCGACTTTCT 608
Query 624 CGAAGCTTTCGTTTACAG-TTCAAGAACCTGAAGATCTTCTTCTTTGTGGTGGACTTGAG 682
| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 609 CTAAGCTTTCGTTTACAGTTTC-TGAACCTGAAGATCTTCTTCTTTGTGGTGGACTTGAG 667
Query 683 TCTTATGATCGGAGTTATGATCGTATTACACCTAAAGCTGATCGTAGACTTGAGCGTTTC 742
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 668 TCTTATGATCGGAGTTTTGATCGTATTACTCCTAAAGCTGATCGTAGACTTGAGCGTTTC 727
Query 743 AAGAACAGGAGCTTTAAGGTTACTACAAGTGATGATCTTGTGATTAGACGTCTCGCTAAG 802
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 728 AAGAACAGAAGCTTTAAGGTTACTACAAGTGATGATCTTGTGATCAGACGTCTTGCTAAA 787
Query 803 GAAGATAAAGCTACTGTTTTTGCTACTGATGCTATTCTTGCTGCTCTTATGTGTGCTCCT 862
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 788 GAAGATAAAGCTACTGTTTTTGCTACTGATGCTATTCTAGCTGCTCTTATGTGTGCTCCT 847
Query 863 AGATCGGTTTATTCATGGGATCTTGTGATTCAACGTGTTGGGAATAAGCTTTTCTTTGAT 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 AGATCGGTTTATTCATGGGATCTTGTGATTCAACGTGTTGGGAATAAGCTTTTCTTTGAT 907
Query 923 AAGAGAGATGGGTCGCCGCTAGATTTGTTGTCTGTTCATGAAACGTCTCAAGAGCCTTTG 982
|||||||||||||| ||||| |||||||| ||||||||||| || |||||||||||||||
Sbjct 908 AAGAGAGATGGGTCACCGCTTGATTTGTTATCTGTTCATGAGACTTCTCAAGAGCCTTTG 967
Query 983 CCTGAAGCTAAAGATGATATTAACTCTGCTCATTCTCTAGGTGTGGAGGCTGCTTATATT 1042
||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 968 CCTGAGGGTAAAGATGATATTAACTCTGCTCATTCTCTAGGTCTGGAGGCTGCTTATATT 1027
Query 1043 AATCAGAATTTTGCTCAGCAGGTTTTGGTTAGGAATGGAAAAAGGGTAACTTTTGATGAG 1102
||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct 1028 AATCAGAATTTTGCTCAGCAGGTTTTGGTTAAGAATGGGAAAAGGGAAACTTTTGATGAG 1087
Query 1103 CCGATTCCGAATGTTAATGAAGGTGAAGAGAATGCTTCTATTGCTTATAGGTATAGGAGA 1162
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 CCAATTCCTAATGTTAATGAAGGTGAAGAGAATGCTTCTATTGCTTATAGGTATAGGAGA 1147
Query 1163 TGGAAGCTTGATGATAGTATGTATCTAGTTGCTAGGTGTGAGTTACAGAGCACTGTTGAT 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 TGGAAGCTTGATGATAGTATGTATCTAGTTGCTAGGTGTGAGTTACAGAGCACTGTTGAT 1207
Query 1223 TTGAATAACCAGAGATCATTCTTAACTTTGAATGCTCTTAACGAGTTTGATCCTAAGTAC 1282
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1208 TTGAATAACCAGAGATCGTTTTTAACTTTGAATGCTCTTAACGAGTTTGATCCTAAGTAC 1267
Query 1283 TCTGGTGTTGATTGGAGACAGAAGCTCGAGACTCAGAGAGGTGCGGTTTTAGCTAATGAG 1342
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1268 TCTGGTGTTGATTGGAGACAGAAGCTTGAGACTCAGAGAGGTGCGGTTTTAGCTAATGAG 1327
Query 1343 TTGAAGAACAATGGTAATAAGTTAGCTAAATGGACCGCACAGGCCCTCTTGGCTAATGCG 1402
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 1328 TTGAAGAACAATGGTAATAAGTTAGCTAAATGGACTGCGCAGGCTCTCTTGGCTAATGCG 1387
Query 1403 GATATGATGAAGATTGGGTTTGTTTCGAGGGTTCATCCTCGTGATCATTTTAACCATGTT 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 GATATGATGAAGATTGGGTTTGTTTCGAGGGTTCATCCTCGTGATCATTTTAACCATGTT 1447
Query 1463 ATATTATCGGTTTTGGGGTATAAGCCGAAGGATTTCGCTGGGCAGATTAATCTGAACACT 1522
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1448 ATATTATCGGTTTTGGGGTATAAGCCGAAAGATTTCGCTGGGCAGATCAATCTGAACACT 1507
Query 1523 AACAACATGTGGGGAATTGTGAAGTCGATTGTTGATCTGTGTATGAAGTTAAGTGAAGGA 1582
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1508 AACAATATGTGGGGAATTGTGAAGTCGATTGTTGATCTGTGTATGAAGTTAAGTGAAGGA 1567
Query 1583 AAGTATGTTCTAGTGAAGGATCCATCGAAGCCTCAAGTTAGGATTTACGAAGTTCCAGCT 1642
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1568 AAGTATGTTCTAGTGAAGGATCCATCGAAGCCTCAAGTTAGGATTTACGAAGTTCCGGCT 1627
Query 1643 GATGCTTTTGACAATGATTATGTGGAGGAGCCTCTCCCTGAGGATGAACAGGTTCAGCCA 1702
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1628 GATGCATTTGACAATGATTATGTGGAGGAGCCACTCCCTGAAGATGAACAGGTTCAGCCA 1687
Query 1703 CCTGAGGAGAACACTGATGCAGGAGCAGAGACTAATGGTGCTTCCTCTACTAATGTAGCT 1762
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1688 CCTGAGGAGAACACTGATGCAGGAGCAGAGACTAATGGGGTTTCCTCTACTAATGTAGCT 1747
Query 1763 GCAGAGGATAAGAAATCCGAAGCTGAAGCCTGATTT-GATGATATGGGTATATT 1815
| |||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1748 GTAGAGGATAAGAAATCCGAAGTTGAAGCCTGATTTTGATGATATGGGTATATT 1801
> AT4G20980.1 | Symbols: | Eukaryotic translation initiation factor
3 subunit 7 (eIF-3) | chr4:11216931-11219337 FORWARD LENGTH=2126
Length=2126
Score = 1740 bits (942), Expect = 0.0
Identities = 1477/1730 (85%), Gaps = 58/1730 (3%)
Strand=Plus/Plus
Query 37 CGAAGCATTCGAAGTAGGCACAGTCCCATTCAATTCCGATGGTTGGGGACCTCCAGATGC 96
|||||| |||||| | | | | || || |||||||||||||| |||||||||||||| ||
Sbjct 75 CGAAGCTTTCGAATTCGTCGCCGTTCCTTTCAATTCCGATGGCTGGGGACCTCCAGACGC 134
Query 97 TTCCGAC----ACT--T----C-CT-CCACCAGCGTCGCGGCGGCGAATCTCCTCCCAAA 144
||||||| || | | || ||||||||||||| || || ||||| ||||| ||
Sbjct 135 TTCCGACGTTTCCTCCTCCGCCTCTCCCACCAGCGTCGCCGCCGCTAATCTTCTCCCGAA 194
Query 145 CGTCCCTTTCGCTTCCTTCTCACGTTCTGAAAAACTCGGACGCGTCGCTGATTGGACACG 204
||| ||||||||||||||||| ||||| || || ||||| || || ||||||||||| ||
Sbjct 195 CGTTCCTTTCGCTTCCTTCTCCCGTTCCGATAAGCTCGGCCGTGTAGCTGATTGGACTCG 254
Query 205 -AGCTCTCTCAAATCCATCAGCTCGTCCTCACACCGGATCCAAATCAGATCCATCAGCAA 263
| |||||| |||||||| ||||||||| |||||||||||||||||||||| || |||
Sbjct 255 CA-ATCTCTCTAATCCATCCGCTCGTCCTAACACCGGATCCAAATCAGATCCGTCTGCAG 313
Query 264 TCTTCGATTTCTCAGCTTTTGCAGTAGATGAAGGATTTGGTCTAACTAATTCCGGTGG-A 322
| ||||||||||| ||||| ||| | || ||||| || ||||| || |||||||| |
Sbjct 314 TTTTCGATTTCTCCGCTTTCGCAATCGACGAAGGCTTCGGTCTCGCTTCCTCCGGTGGTA 373
Query 323 AACGCCGACGAAGACGCAGCTTTCCGAT-TAGTCGACGGTAAACCACCGCCGCGTCCTAA 381
| | |||||||||||||||||||||| | | |||||||||||||| ||||||||||||||
Sbjct 374 ATC-CCGACGAAGACGCAGCTTTCCG-TCTCGTCGACGGTAAACCTCCGCCGCGTCCTAA 431
Query 382 ATTCGGACCTAAATGGAGATTT-AATCAAT-ACCATAACCGTAATCAGCTTCCTCAACGT 439
|||||||||||||||| | ||| |||| | |||| || || |||||||||||||||||
Sbjct 432 ATTCGGACCTAAATGGCG-TTTCAATC-CTCACCACAATCGGAATCAGCTTCCTCAACGG 489
Query 440 CGTGATGAAGAAGTTGAAGCTAAGAAACGTGAAGCTGAGAAAGATCGAGCTCGTCGTGAT 499
|| ||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||
Sbjct 490 CGAGATGAAGAAGTTGAAGCTAAGAAGCGTGATGCTGAGAAGGAACGAGCTCGTCGTGAT 549
Query 500 CGTCTTTATAATAATAACCGTAACAATATTCATCAGCAACGTCGTGAAGCCGCGGCGTTT 559
||||| || ||||| ||||||||||| || ||||| ||||| |||||||| || || |||
Sbjct 550 CGTCTCTACAATAACAACCGTAACAACATCCATCACCAACGCCGTGAAGCTGCCGC-TTT 608
Query 560 -AAATCATCAGTTGATATTCAACCGGAATGGAATATGCTTGAGCAGATTCCTTTTTCGAC 618
|||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||| || ||
Sbjct 609 CAAATCATCCGTTGATATTCAGCCGGAGTGGAACATGCTTGAGCAGATCCCTTTCTCAAC 668
Query 619 TTTCTCGAAGCTTTCGTTTACAGTTCAAGAACCTGAAGATCTTCTTCTTTGTGGTGGACT 678
||||||||||| |||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 669 ATTCTCGAAGCTCTCGTACACAGTTCAAGAACCAGAAGATCTTCTTCTCTGTGGTGGCCT 728
Query 679 TGAGT-CTTATGATCGGAGTTAT-GATCGTATTACACC-TAAAGCTGATCGTAGACTTGA 735
||||| | || | | | || | ||||| || || || ||| | || || ||||| ||
Sbjct 729 TGAGTAC-TA-CAACCGCCTTTTCGATCGCATAACGCCGAAAAAC-GAACGCAGACTCGA 785
Query 736 GCGTTTCAAGAACAGGAGC-T-TT-AAGGTTACTACAAGTGATGATCTTGTGATTAGACG 792
||||||||||||||||| | | || || || ||||| |||||||||| ||||||||| ||
Sbjct 786 GCGTTTCAAGAACAGGAACTTCTTCAAAGTCACTACTAGTGATGATCCTGTGATTAGGCG 845
Query 793 TCTCGCTAAGGAAGATAAAGCTACTGTTTTTGCTACTGATGCTATTCTT-GCTGCTCTTA 851
| | ||||||||||| |||||||||||||| ||||||||||||| | || ||||||||||
Sbjct 846 TTTAGCTAAGGAAGACAAAGCTACTGTTTTCGCTACTGATGCTA-TATTAGCTGCTCTTA 904
Query 852 TGTGTGCTCCTAGATCGGTTTATTCATGGGATCTTGTGATTCAACGTGTTGGGAATAAGC 911
|||||||||||||||| ||||| || |||||| |||| |||||||||||||| || || |
Sbjct 905 TGTGTGCTCCTAGATCTGTTTACTCTTGGGATATTGTTATTCAACGTGTTGGTAACAAAC 964
Query 912 TTTTCTTTGATAAGAGAGATGGGTCGCCGCTAGATTTGTTGTCTGTTCATGAAACGTCTC 971
| |||||||| ||||||||||| || | ||| |||||||||||||| ||||| || ||||
Sbjct 965 TGTTCTTTGACAAGAGAGATGGATCACAGCTTGATTTGTTGTCTGTGCATGAGACATCTC 1024
Query 972 AAGAGCCTTTGCCTGAAG-CTAAAGATGATATTAACTCTGCTCATTCTCTAGGTGTGGAG 1030
||||||| ||||||| || ||||||||||||| || |||||||||||||||||||||||
Sbjct 1025 AAGAGCCATTGCCTG-AGTCTAAAGATGATATCAATTCTGCTCATTCTCTAGGTGTGGAA 1083
Query 1031 GCTGCTTATATTAATCAGAA-TTTTGCTCAGCAGGTTTTGGTTAGGA-ATGGAAA-AAGG 1087
|||||||| || |||||||| |||| | |||||||||||||||| || ||||||| || |
Sbjct 1084 GCTGCTTACATCAATCAGAACTTTT-CGCAGCAGGTTTTGGTTA-GAGATGGAAAGAA-G 1140
Query 1088 GTAACTTTTGATG-AGCCGATTCCGA-ATGTTAATGAAGGTGAAGAGAATGCTTCTATTG 1145
| ||||||||||| |||| | ||| | || ||||||||||||||||| ||||||| |||
Sbjct 1141 GAAACTTTTGATGAAGCC-AATCC-ATTTGCTAATGAAGGTGAAGAGATTGCTTCTGTTG 1198
Query 1146 CTTATAGGTATAGGAGATGGAAGCTTGATGATAGTATGTATCTAGTTGCTAGGTGTGAGT 1205
||||||||||||| || |||||||||||||||| |||| |||| ||||| ||||||||||
Sbjct 1199 CTTATAGGTATAGAAGGTGGAAGCTTGATGATAATATGCATCTTGTTGCGAGGTGTGAGT 1258
Query 1206 TACAGAGCACTGTTGATTTGAATAACCAGAGATC-ATTCTTAACTTTGAATGCTCTTAAC 1264
||||||| || |||| | || ||||| || || ||||| ||||||||||||||||||
Sbjct 1259 TACAGAGTGTTGCTGATCTCAACAACCAAAGGTCGTTTCTT-ACTTTGAATGCTCTTAAC 1317
Query 1265 GAGTTTGATCCTAAGTACTCTGGTGTTGATTGGAGACAGAAGCTCGAGACTCAGAGAGGT 1324
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1318 GAGTTTGATCCTAAGTACTCTGGTGTTGATTGGAGACAGAAGCTTGAAACTCAGAGAGGT 1377
Query 1325 GCGGTTTTAGCTA-ATGAGTTGAAGAACAATGGTAATAAGTTAGCTAAATGGACCGCACA 1383
||||||||||||| | || |||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1378 GCGGTTTTAGCTACA-GAATTGAAGAACAATGGAAATAAGTTGGCTAAATGGACTGCACA 1436
Query 1384 GGCCCTCTTGGCTAATGCGGATATGATGAAGATTGGGTTTGTTTCGAGGGTTCATCCTCG 1443
|| | ||||||||||| ||||||||||||||||| ||||| || ||||||||||||||
Sbjct 1437 AGCTTTATTGGCTAATGCTGATATGATGAAGATTGGTTTTGTCTCTAGGGTTCATCCTCG 1496
Query 1444 TGATCATTTTAACCATGTTATATTATCGGTTTTGGGGTATAAGCCGAAGGATTTCGCTGG 1503
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1497 TGATCATTTCAACCATGTTATATTATCTGTTTTGGGGTATAAGCCGAAGGATTTCGCTGG 1556
Query 1504 GCAGATTAATCTGAACACTAAC-AACATGTGGGGAATTGTGAAGTCGATTGTTGATCTGT 1562
||||||||||| |||||| | ||||||||||| |||||||| || || ||||||||||
Sbjct 1557 ACAGATTAATCTCAACACTT-CTAACATGTGGGGGATTGTGAAATCCATAGTTGATCTGT 1615
Query 1563 GTATGAAGTTAAGTGAAGGAAAGTATGTTCTAGTGAAGGATCCATCGAAGCCTCAAGTTA 1622
||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 1616 GTATGAAACTAAGCGAAGGGAAGTATGTTCTTGTGAAGGATCCATCGAAGCCTCAAGTGA 1675
Query 1623 GGATTTACGAAGTTCCAGCTGATGCTTTTGACAATGATTATGTGGAGGAGCC-TCTCCCT 1681
||||||| || |||||| |||||||||| || |||||||| || ||||| || | | |||
Sbjct 1676 GGATTTATGAGGTTCCACCTGATGCTTTCGAGAATGATTACGTTGAGGAACCGT-TGCCT 1734
Query 1682 GAGGATGAACAGGTTCAGCCACCTGAGGAGAACACTGATGCAGGAGCAGA 1731
|| |||||||||||||||||| ||||||| ||||| || | ||||||||
Sbjct 1735 GAAGATGAACAGGTTCAGCCAACTGAGGAAAACACAGA-G--GGAGCAGA 1781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89808775005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5