BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948706
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44250.1 | Symbols: | Protein of unknown function DUF829, t... 1986 0.0
> AT5G44250.1 | Symbols: | Protein of unknown function DUF829,
transmembrane 53 | chr5:17823745-17825762 REVERSE LENGTH=1485
Length=1485
Score = 1986 bits (1075), Expect = 0.0
Identities = 1199/1258 (95%), Gaps = 11/1258 (1%)
Strand=Plus/Plus
Query 4 AACCCTAATTTACAGAGAAAAGATGTGGGGAATTGGAGGAAATTACTATTGGAGAAAGAA 63
|||||||||||||| |||||| |||||||||||||||||||||||||| ||| ||||| |
Sbjct 121 AACCCTAATTTACACAGAAAATATGTGGGGAATTGGAGGAAATTACTACTGGCGAAAG-A 179
Query 64 GAACAACATCAATGAAGGAAGTCAAAGCGAAGCGATCGTTGTGGTATTCGCTTGGATGTC 123
|| |||| ||| | ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 180 -AA-AACAACAACGGAGG-AG--AAAGCGAAGCGATCGTTGTGGTATTCGCTTGGATGTC 234
Query 124 TAGCGAAGAACGCAATCTCAAGAACCATGTCGATCTTTATTCTTCTCTTCTTTGGGATTC 183
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 235 TAGCGAAGAACGCAATCTAAAGAACCATGTCGATCTCTATTCTTCTCTTCTTTGGGATTC 294
Query 184 TCTCGTTTGCCATTCTCAATTTCTCAACATGTTTCTTCCAGACAAAGCTGCAGATTTAGC 243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 295 TCTCGTTTGCCATTCTCAATTTCTCAACATGTTTCTTCCAGATAAAGCTGCAGATTTAGC 354
Query 244 TTCTAATGTTGTGTCTGAACTTGTGAAGGAGCTTAAAGCAAAGCCAATTCCTTTAGTGTT 303
|||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct 355 TTCTAATGTTGTTTCTGAACTTGTCAAGGAGCTCAAAGCAAAGCCAGTTCCTTTAGTGTT 414
Query 304 TGCTTCTTTCTCTGGTGGTCCTAATGCTTGTATGTATAAAGTTCTTCAAATACTTGAAGG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TGCTTCTTTCTCTGGTGGTCCTAATGCTTGTATGTATAAAGTTCTTCAAATACTTGAAGG 474
Query 364 AACATGCGTAACCGGACTAAATCCGGATGATTGTAGATTGGTTAGAAACTGTATTTCAGG 423
|||||||| ||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 475 AACATGCGAAACGGGACTAAATCCGGATGATTGTAGATTGGTTAGAAACTGCATCTCAGG 534
Query 424 GTTTATCTATGACTCGTGTCCTGTGGATTTCACTAGCGACTTGGGAGCTCGATTAGCGGT 483
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GTTTATTTATGACTCATGTCCTGTGGATTTCACTAGCGACTTGGGAGCTCGATTAGCGGT 594
Query 484 TCATCCAACTACGCTTAAAATGTCTAATCCACCTAAACCGTTTGTTTGGGCAGCGAATGG 543
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 595 TCATCCAACTACGCTTAAAATGTCTAGTCCACCTAAACCGTTTGTATGGGCAGCGAATGG 654
Query 544 TATTGCTTCGAGTCTCGATTATGTTTTCCTCAACAGGTTTGAATCACAGCGAGCTGAGTT 603
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 655 TATTGCTTCGAGTCTCGATTATGTTTTTCTCAACAGGTTTGAATCACAGCGAGCCGAGTA 714
Query 604 CTGGCAGACTCTTTACTCTACTATAACCATGAGAGTACCTTATCTCATTCTATGCTCTGA 663
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 715 CTGGCAGACTCTTTACTCTACTATAATCATGAGAGTACCTTATCTCATTCTATGCTCTGA 774
Query 664 AAACGATGACCTTGCTCCTTATCAAACTATACACAATTTCGCTACACGTCTCCAAGAATT 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 775 AAACGATGACCTTGCTCCTTATCAAACTATACACAATTTCGCTACACGTCTCCAAGAACT 834
Query 724 AGGAGGAAATGTAAAACTTGTAAAATGGAATGATTCTCCTCATTGTGGTCATTATCGTTA 783
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 835 AGGAGGAAATGTAAAACTTGTAAAATGGAATGATTCCCCTCATTGTGGTCATTATCGTTA 894
Query 784 TAACCAGGTCGACTATAAAGCTGCTGTATCTGAGTTCTTGTCAAAAGCAGCGTCGGTTTA 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TAACCAGGTCGACTATAAAGCTGCTGTATCTGAGTTCTTGTCAAAAGCAGCGTCGGTTTA 954
Query 844 T-CTGCAGAAGACAAGAAGTCTTGACAGAGAAGCTATGAAAGAAACTCAATGTGATGATG 902
| | ||||||||| |||||||||||||||||||||||||||| ||| | ||| ||||||
Sbjct 955 TTC-GCAGAAGACGAGAAGTCTTGACAGAGAAGCTATGAAAGGAAC--A-TGTCATGATG 1010
Query 903 AGATAACAGAGCCAATTCAAAGCTTGGGGCAATCAACCTCTGGTGTTAACAGAAGCTTCA 962
||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct 1011 AGATAACAGAGCCAATTCAGAGCTTGGGGCAATCAACCTCTGGTCTTAACCGAAGCTTCA 1070
Query 963 ACGGAACTCCACTTGTCACAACCGATCATTTCTTTGTGCCTACCACCGTAGGTTACTACG 1022
|||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 1071 ACGGAACTCCACTTGTCACAACCGATCATTTCTTCGTACCTAGCACCGTAGGTTACTACG 1130
Query 1023 TGGGCAGAGATGGTGGATATGTGCAAGATGAACACAAACAAGACTTGATTCGTTTGTCCA 1082
|||||||||| || ||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1131 TGGGCAGAGACGGCGGATATGTGCAAGATGAACACAAACAAGATTTGATTTGTTTGTCCA 1190
Query 1083 ATACTCAAACCGATGAATCGGTTAAGCCCAATGGAGTTCTAGGCCAAATCTTGTTTGATG 1142
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1191 ATACTCAAACCAATGAATCGGTTAAGCCCAATGGAGTTCTAGGCCAAATCTTATTTGATG 1250
Query 1143 TTTATATTCCGAAGAATGTCGAGGATTGGGATATAAAGTTATCAGAAACCGGGCGGGCTA 1202
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||
Sbjct 1251 TTTATATTCCGAAGAATGTTGAGGATTGGGATATAAAGCTATCAGAAACCGGGCGGTCTA 1310
Query 1203 GGCGGAGACCGGGGAAGAGGTTTATACGTAGATCGAGATTGTAACATCCGAGTTATAT 1260
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1311 GGCGGAGACCGGGGAAGAGATTTATACGTAGATCGAGATTGTAACATCTGAGTTATAT 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5