BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948708
Length=2020
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44230.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3066 0.0
> AT5G44230.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:17814336-17816309 FORWARD LENGTH=1974
Length=1974
Score = 3066 bits (1660), Expect = 0.0
Identities = 1873/1978 (95%), Gaps = 5/1978 (0%)
Strand=Plus/Plus
Query 21 ATGACGGTGGCTCATTCTCACCGGTTCTCGACGGCGGTAAATCCCATTAACATAAGCTTG 80
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1 ATGACGGTGGCTCATTCTCACCGGTTCTCGACGGCGGTAAACCCCATTAACATTAGCTTG 60
Query 81 CTTTCAAAACAACTACTTCAGCTTGGAAGAACCAATAACAACAATTCCAGTACCTTCTCA 140
|||||||||||| |||||||||||||||||| | | | ||||||||| |||||||||||
Sbjct 61 CTTTCAAAACAATTACTTCAGCTTGGAAGAA-C-A-AGTAACAATTCCGGTACCTTCTCA 117
Query 141 GAGATCAGTCACCAAAGAGAGCTTCTAGTGTCTTCACTCATCTCAAAGCTCGACGATTGC 200
||||||||| | |||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 118 GAGATCAGTAATCAAAAAGAACTTCTAGTGTCTTCACTCATCTCAAAGCTCGATGATTGC 177
Query 201 ATCAATCTCAATCAAATCAAGCAAATTCATGGTCATGTTCTCCGTAAAGGTCTCGATCAA 260
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 178 ATCAATCTCAATCAAATCAAGCAAATTCATGGCCATGTTCTCCGTAAAGGTCTCGATCAA 237
Query 261 AGCTGTTACATTCTCACCAAGCTAATTCGCACGTTAACCAAGCTCGGTGTTCCAATGGAT 320
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 238 AGCTGTTACATTCTCACGAAGCTAATTCGCACGTTAACGAAGCTCGGTGTTCCAATGGAT 297
Query 321 CCATATC-CTCGCCGTGTAATCGAGCCTGTTCAGTTCCGGAACCCATTTCTATGGACCGC 379
||||| | ||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 298 CCATA-CGCTCGCCGTGTAATCGAGCCTGTTCAATTCCGGAACCCGTTTCTATGGACCGC 356
Query 380 AGTGATTCGTGGGTATACGATTGAAGGTAAATTCGATGAAGCTATTGCTATGTATGGATG 439
|||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 357 AGTGATTCGTGGGTATGCGATAGAAGGTAAATTTGATGAAGCTATTGCTATGTATGGATG 416
Query 440 TATGAGGAAAGAAGAGATTACGCCAGTTTCTTTCACTTTCTCTGCTCTTTTGAAAGCTTG 499
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 TATGAGGAAAGAAGAGATTACGCCTGTTTCTTTCACTTTCTCTGCTCTTTTGAAAGCTTG 476
Query 500 TGGATTAATGGGAGATTTGAATTTAGGTCGGCAGTTTCATGCACAGACGTTTAGACTTAG 559
|||| |||| |||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 477 TGGAACAATGAAAGATTTGAATTTGGGTCGTCAGTTTCATGCACAGACGTTTAGACTTAG 536
Query 560 AGGGTTTTGTTTTGTATATGTTGGGAATACAATGATTGATATGTATGTGAAATGTGGGTC 619
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 537 AGGGTTTTGTTTTGTATACGTTGGGAATACAATGATTGATATGTATGTGAAATGTGAATC 596
Query 620 TATTGTTTGTGCGCGTAAGGTGTTTGACGAAATGCCTGAACGAGATGTGATTTCGTGGAC 679
||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 597 TATTGATTGTGCGCGTAAGGTGTTTGATGAAATGCCTGAACGAGATGTGATATCGTGGAC 656
Query 680 TGAGCTTATTGCTGCGTATGCTAGAGTTGGGAATATGGAATCTGCTGCGGATTTGTTTGA 739
||||||||||||||||||||| |||||||| |||||||||| ||| ||||| |||||||
Sbjct 657 TGAGCTTATTGCTGCGTATGCGAGAGTTGGAAATATGGAATGTGCAGCGGAACTGTTTGA 716
Query 740 AAGTTTGCCTACGAAAGATATGGTGGCTTGGACTGCTATGGTTACGGGATTTGCGCAGAA 799
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AAGTTTGCCTACGAAGGATATGGTGGCTTGGACTGCTATGGTTACGGGATTTGCGCAGAA 776
Query 800 TGCTAAACCTCAGGAAGCTTTAGAGTATTTTGATAGGATGGAGAAATCGGGAATTCGAGC 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGCTAAACCTCAGGAAGCTTTAGAGTATTTTGATAGGATGGAGAAATCGGGAATTCGAGC 836
Query 860 TGATGAGGTTACTGTGGCTGGATATATATCGGCCTGTGCGCAGCTGGGAGCAAGTAAATA 919
||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 837 TGATGAGGTTACTGTCGCCGGATATATATCGGCTTGTGCGCAGCTTGGAGCAAGTAAATA 896
Query 920 CGCTGATCGAGCTGTTCAAATCGCTCAGAAATCTGGGTATTCTCCTAGGGATCATGTTGT 979
||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 897 CGCTGATCGGGCTGTTCAAATTGCTCAGAAATCTGGGTATTCTCCTAGTGATCACGTTGT 956
Query 980 TATTGGGTCTGCGTTGATAGATATGTACTCAAAATGCGGAAATGTAGAAGAGGCAGTTAA 1039
||| |||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 957 TATCGGGTCTGCTTTGATAGATATGTACTCGAAATGTGGAAACGTAGAAGAGGCAGTTAA 1016
Query 1040 TGTGTTTGTGTCGATGAACAACAAAAACGTTTTCTCTTACAGTTCGATGATCCTTGGTCT 1099
||||||| |||||||||||||||||||||||||| |||| |||||||||||||| |||||
Sbjct 1017 TGTGTTTATGTCGATGAACAACAAAAACGTTTTCACTTATAGTTCGATGATCCTAGGTCT 1076
Query 1100 TGCTATGCACGGACGTGCTCAAGAGGCTTTAGATCTGTTCCACTACATGGTAACGCAGAC 1159
||||| |||||| |||||||||||||||||| |||| || || ||||||||||| |||||
Sbjct 1077 TGCTACGCACGGGCGTGCTCAAGAGGCTTTACATCTTTTTCATTACATGGTAACACAGAC 1136
Query 1160 AGCGATAAAACCAAACACGGTTACATTTGTTGGTGCGCTTACGGCTTGCAGCCACTCGGG 1219
|| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1137 AGAGATAAAACCAAATACGGTTACATTTGTTGGTGCGCTTATGGCTTGCAGCCACTCGGG 1196
Query 1220 ACTCGTTGACCAAGGACGTCAAGTATTTGATTCTATGTATCAAACATTCGGTGTTGAACC 1279
||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1197 ACTTGTTGACCAAGGACGTCAAGTATTTGATTCTATGTATCAAACATTTGGTGTTCAACC 1256
Query 1280 AACGCGGGATCACTATACTTGTATGGTCGATCTTCTTGGCCGTGCAGGGCGGTTACAAGA 1339
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1257 AACGCGGGATCACTATACTTGTATGGTCGATCTTCTTGGCCGTACAGGGCGGTTACAAGA 1316
Query 1340 AGCCCTTGAGCTGATTAAAACTATGTCTGTTGAACCACACGGAGGTGTATGGGGTGCATT 1399
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1317 AGCCCTTGAGCTGATTAAAACTATGTCTGTTGAGCCACACGGAGGTGTATGGGGTGCATT 1376
Query 1400 GCTCGGTGCCTGCAGGATTCACAACAATCCAGACATAGCAGAGATTGCTGCAGAACATTT 1459
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1377 GCTCGGTGCCTGCAGGATTCACAACAATCCAGAGATAGCAGAGATTGCTGCAGAACATTT 1436
Query 1460 GTTTGAATTGGAACCGGACATTATCGGAAACTATATATTGCTCTCTAACGTCTACTCGTC 1519
||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 1437 GTTTGAATTGGAACCGGACATTATCGGAAACTATATATTGCTCTCCAATGTCTACGCGTC 1496
Query 1520 AGCTGGAGACTGGGGCAGCGTTTTAAGAGTGAGGAAACTGATTAAAGAAAAGGGTTTGAA 1579
|||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1497 AGCTGGAGACTGGGGCGGAGTTTTAAGAGTGCGGAAACTGATTAAAGAAAAGGGTTTGAA 1556
Query 1580 GAAGACACCGGCGGTTAGTTGGGTTGTAGATAAGAACGGTCAGATGCATAAGTTTTTCCC 1639
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1557 GAAGACACCCGCGGTTAGTTGGGTTGTAGATAAGAATGGTCAGATGCATAAGTTTTTCCC 1616
Query 1640 GGGAAACCTAAACCATCCAATGTCAAAAAAGATTCAAGACAAGTTAGAAGAGCTTGTAGA 1699
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1617 TGGAAACCTGAACCATCCAATGTCAAATAAGATTCAAGACAAGTTAGAAGAGCTTGTAGA 1676
Query 1700 AAGATTAACGGCACTAGGGTATCAACCGGATTTAAGCTCTGTGCCCTACGACGTGAGTGA 1759
||||||||||| | |||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1677 AAGATTAACGGTATTAGGATATCAACCGGATTTGAGCTCTGTGCCATACGACGTGAGTGA 1736
Query 1760 CAATGCAAAGAGGTTGATACTGATACAGCACACCGAGAAGCTGGCTTTAGCGTTCTCTTT 1819
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1737 CAATGCGAAGAGGTTGATACTGATACAGCATACCGAGAAGCTAGCTTTAGCGTTCTCTTT 1796
Query 1820 ACTCACTACGAACAGAGATTCTACAATAAAAATAATGAAGAATTTGAGGATGTGCCAAGA 1879
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||
Sbjct 1797 ACTCACTACGAACAGAGATTCTACGATAACAATAATGAAGAATTTGAGGATGTGCCTAGA 1856
Query 1880 TTGTCACATGTTTATGCGTTTAGCATCAGAGGTTACAGGGAGGGTGATTATAATGAGGGA 1939
|||||||| |||||||||||| ||||||||||| ||||||| ||| ||||||||||||||
Sbjct 1857 TTGTCACAAGTTTATGCGTTTGGCATCAGAGGTCACAGGGAAGGTAATTATAATGAGGGA 1916
Query 1940 TAATATGAGATTCCACCATTTTAGGAGTGGAGCTTGTTCTTGTGGTGATTTTTGGTGA 1997
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1917 TAATATGAGATTCCACCATTTTAGGAGTGGAGATTGTTCTTGTGGTGATTTTTGGTGA 1974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100099886730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5