BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948716
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44170.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1138 0.0
> AT5G44170.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:17780378-17781283
FORWARD LENGTH=906
Length=906
Score = 1138 bits (616), Expect = 0.0
Identities = 704/744 (95%), Gaps = 16/744 (2%)
Strand=Plus/Plus
Query 11 GAAGAAGAGAAATGAAATTCACAGATTCTCCGGTGATCGATCTGACGGTGAACGGTACAA 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 6 GAAGAAGAGAAATGAAATTCACAGATTCTCCGGTGATCGATCTGACGGTGAACGGCACAA 65
Query 71 AACTCTCATTCCAACAAGACAATGGCTCAATGCACGTCGGAACCTCCGTCTGGCCTTGCT 130
|||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 66 AACTCTCAATCCAACAAGACAATGGCTCTATGCACGTCGGAACTTCCGTCTGGCCTTGCT 125
Query 131 CACTAATCCTCTCCAAATTCGCCGAACGATGGTCAACACTAGACtcatcatcatcatcat 190
|||||||||| ||||||||||| ||||| ||||||||||||| | | |||||||
Sbjct 126 CACTAATCCTATCCAAATTCGCTGAACGCTGGTCAACACTAG-------A-C-TCATCAT 176
Query 191 catcaACAACAACATCTCCAAATCCATACGCCGAACTCTTCGATTTCCGCCGCCGTCGCG 250
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 177 CAT---CAACAACATCTCCAAATCCATACGCCGAACTCTTCGATTTCCGTCGCCGTCGAG 233
Query 251 GAATCGAGCTAGGAACCGGATGCGGAGTCGCCGGTATGGCTTTTCACTTACTAGGTCTTA 310
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 234 GAATCGAGCTAGGAACAGGATGCGGAGTCGCCGGTATGGCTTTTTACTTACTAGGTCTAA 293
Query 311 CGGAGATCGTACTCACAGACATAGCACCAGTCATGCCGGCGCTAAAACACAATCTGAAAC 370
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 294 CGGAGATCGTACTCACAGACATAGCACCAGTCATGCCTGCGCTAAAACACAATCTGAAAC 353
Query 371 GGAACAAAACGGCGTTAGGTAAATCTCTGAAAACCTCGATTGTTTATTGGAACAATCGAG 430
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 354 GGAACAAAACGGCGTTAGGTAAATCTCTAAAAACCTCGATTGTTTATTGGAACAATCGAG 413
Query 431 ATCAGATCTCGGCGTTGAAACCGCCGTTTGATTTGGTTATTGCGGCGGATGTTGTGTATA 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 ATCAGATCTCGGCGTTGAAACCGCCGTTTGATTTGGTTATTGCGGCGGATGTTGTGTATA 473
Query 491 TTGAGGAATCTGTAGGGCAGTTAGTGACGGCGATGGAGTTG-TTGGTGGCGGATGATGGT 549
||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||
Sbjct 474 TTGAGGAATCTGTAGGGCAATTAGTGACGGCGATGGAGTTGCTT-GTGGCGGATGATGGT 532
Query 550 GCGGTGTTGTTAGGTTATCAGATTAGGTCACCGGAAGCTGATAAGTTGTTTTGGGAGTTA 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GCGGTGTTGTTAGGTTATCAGATTAGGTCACCGGAAGCTGATAAGTTGTTTTGGGAGTTA 592
Query 610 TGCGACGTCGTTTTTAAGATTGAGAAAGTTCCTCATGAGCATCTTCAT-CATGATTATGC 668
|||||| ||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 593 TGCGACATCGTTTTTAAGATTGAGAAAGTTCCTCATGAGCATCTGCATTC-TGATTATGC 651
Query 669 TTATGAGGAAACTGATGTTTATATCTTTAGGAAGAAGGTTAAGAAGAATGAAGCAGAATC 728
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 652 TTATGAAGAAACTGATGTTTATATCTTTAGGAAGAAGGTGAAGAAGAATGAAGCTGAATC 711
Query 729 TGAATCATGAAGCTAGTTTTTGTT 752
| |||||||||||||||| |||
Sbjct 712 AGTGTCATGAAGCTAGTTTTGGTT 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36821629751
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5