BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948717
Length=1442
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44160.1 | Symbols: NUC | C2H2-like zinc finger protein | ch... 2170 0.0
AT3G50700.1 | Symbols: AtIDD2, IDD2 | indeterminate(ID)-domain ... 246 4e-64
> AT5G44160.1 | Symbols: NUC | C2H2-like zinc finger protein |
chr5:17772941-17775686 FORWARD LENGTH=1724
Length=1724
Score = 2170 bits (1175), Expect = 0.0
Identities = 1351/1435 (94%), Gaps = 16/1435 (1%)
Strand=Plus/Plus
Query 1 TCAAGAACCCAGAAGAAGACATGACAAGTGAAGTTCTTCAAACAATCTCTAGTGGATCAG 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 131 TCAAGAACCCAGAAGAAGACATGACAAGTGAAGTTCTTCAAACAATCTCAAGTGGATCAG 190
Query 61 GTTTTGCT------CAGAGCTCATCAACTCTAGATCATGATGAATCTCTCATCAATCCTC 114
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 191 GTTTTGCTCAGCCACAGAGCTCATCAACCCTGGATCATGATGAATCTCTCATCAATCCTC 250
Query 115 CTCTTGTTAAGAAGAAGAGAAATCTCCCAGGAAATCCTGATCCGGAAGCTGAAGTGATAG 174
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 251 CTCTTGTTAAGAAAAAGAGAAATCTCCCTGGAAATCCTGATCCGGAAGCTGAAGTGATAG 310
Query 175 CTCTATCCCCCAAGACCCTGATGGCTACAAACCGGTTCCTATGCGAGATCTGTGGCAAAG 234
|| ||||||||| |||| |||||||||| |||||||||||||| ||| | ||||||||||
Sbjct 311 CTTTATCCCCCACGACCTTGATGGCTACGAACCGGTTCCTATGTGAGGTATGTGGCAAAG 370
Query 235 GTTTCCAAAGAGACCAAAACTTACAGCTTCATCGGCGAGGACACAATCTTCCATGGAAGT 294
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 371 GTTTCCAAAGAGACCAAAACTTACAGCTTCATCGGCGAGGACATAATCTTCCATGGAAGT 430
Query 295 TGAAGCAGAGGACAAGCAAAGAAGTGAGAAAACGTGTCTACGTTTGCCCCGAGAAGACAT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TGAAGCAGAGGACAAGCAAAGAAGTGAGAAAACGTGTCTACGTTTGCCCCGAGAAGACAT 490
Query 355 GCGTCCACCATCACTCCTCTAGAGCTCTAGGCGATCTCACCGGAATCAAGAAGCATTTCT 414
| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 491 GTGTCCACCATCACTCCTCTAGAGCTCTAGGCGATCTCACTGGAATCAAAAAGCATTTTT 550
Query 415 GCCGGAAACACGGCGAGAAGAAGTGGAAGTGCGAGAAATGTGCCAAGAGATACGCAGTCC 474
||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 551 GCCGGAAACACGGGGAGAAGAAGTGGACGTGCGAGAAATGTGCTAAGAGATACGCAGTCC 610
Query 475 AATCTGATTGGAAAGCTCATTCCAAGACTTGTGGTACTAGAGAGTACCGTTGCGACTGTG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 611 AATCTGATTGGAAAGCTCATTCCAAGACTTGTGGTACTAGAGAGTACCGTTGCGATTGTG 670
Query 535 GCACCATTTTTTCAAGGCGAGACAGCTTCATCACTCATAGAGCTTTTTGCGATGCCTTAG 594
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 671 GCACCATTTTCTCAAGGCGAGACAGCTTTATCACTCATAGAGCTTTCTGCGATGCCTTAG 730
Query 595 CGGAAGAAACCGCTAAGATAAACGCAGTGTCTCATCTCAATGGTTTAGCGGCTGCTGGAG 654
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 731 CGGAAGAAACCGCTAAGATAAACGCAGTGTCTCATCTCAACGGTTTAGCCGCGGCTGGAG 790
Query 655 CAGCAGGATCAGTTAATATCAACTATCAATATCTCATGGGAACATTCATTCCACCGCTTC 714
| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 791 CCCCAGGATCAGTTAATCTCAACTATCAATATCTCATGGGAACATTCATCCCACCGCTTC 850
Query 715 AACCATTTGTACCGCAACCGCAAACAAATCAAAACCATCATCATCAACATTTTCAGCCAC 774
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 851 AACCATTTGTACCACAACCGCAAACAAATCCAAACCATCATCATCAACATTTTCAGCCAC 910
Query 775 CACCTCCGTCGTCGCTCTCCCTATGGATGGGACAAGATATCGCGCCGCCTCAACCGCAAC 834
|| || | ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 911 CAACTTCTTCGTCGCTCTCTCTATGGATGGGACAAGATATCGCGCCGCCTCAACCGCAAC 970
Query 835 CGCAGGACTACGACTGGGTTTTCGGAAACGCTAAGGCAGCGTATGCATGCATTGATAATA 894
|| | ||||||| |||||||| ||||||||||||||||||| ||| |||||||||||||
Sbjct 971 CG--G-ACTACGATTGGGTTTTTGGAAACGCTAAGGCAGCGTCTGCTTGCATTGATAATA 1027
Query 895 ATAATACTCACGCTGAGCACATTACGCAAAACGCAAACGCAAGTTTGACCACTACTACTA 954
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1028 ATAATACTCACGATGAGCAGATTACGCAAAACGCAAACGCAAGTTTGACCACTACCACTA 1087
Query 955 CTCTCTCTGTCCCTTCTTTATTCAGCAATGACCAACCACAAAACGCAAACGCAAACTCAA 1014
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1088 CTCTCTCTGCCCCTTCTTTATTCAGCAGCGACCAACCACAAAACGCAAACGCAAATTCAA 1147
Query 1015 ACGTGAATATGTCCGCAACAGCGTTACTACAGAAAGCTGCTGAAATTGGCGTTACTTCTA 1074
|||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1148 ACGTGAATATGTCCGCGACAGCTTTACTACAGAAAGCTGCTGAAATTGGCGCTACTTCTA 1207
Query 1075 CAACGACGGCGGCGACTAACGACC-AGTCAACGTTTCTTCAAAGTTTCCCGCTTAAATCC 1133
|||| || || ||||| || |||| | |||||||||||||||||||||||||||||||||
Sbjct 1208 CAACAACCGCAGCGACCAATGACCCA-TCAACGTTTCTTCAAAGTTTCCCGCTTAAATCC 1266
Query 1134 TCCGATCAAACCACCACTTATGACGGTGGCGAAAAGTTCTTTGCTTTGTTCGGGTCTAAC 1193
||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1267 ACCGATCAAACCACCAGTTATGACAGTGGCGAAAAGTTTTTTGCTTTGTTCGGGTCTAAC 1326
Query 1194 AACAACATTGGGTTAATGAGTCATAGTCATAATCATCAGGAGATTGAGAACGCTAGAAAT 1253
|||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||
Sbjct 1327 AACAACATTGGGTTAATGAGTCGTAGTCATGATCATCAAGAGATCGAGAACGCTAGAAAT 1386
Query 1254 GACGTTACGGTTGCGTCTGCGTTGGATGAATTACAGAATTACCCTTGGAAACGTAGAAGA 1313
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GACGTTACGGTTGCGTCTGCCTTGGATGAATTACAGAATTACCCTTGGAAACGTAGAAGA 1446
Query 1314 GTTGATGGTGGAGG--A-G-GAGCTGGAGGAGGGCAAACTCGGGATTTCCTCGGGGTCGG 1369
|||||||||||||| | | | | ||||||||||||||||||||||||||||||||| ||
Sbjct 1447 GTTGATGGTGGAGGTGAAGTGGG-TGGAGGAGGGCAAACTCGGGATTTCCTCGGGGTTGG 1505
Query 1370 TGTACAAACGTTGTGCCATCCATCGTCTATCAATGGATGGATTTGAAACAGTTTA 1424
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1506 TGTACAAACGTTGTGCCATCCATCGTCTATCAATGGATGGATTTGAAAGAGTTTA 1560
> AT3G50700.1 | Symbols: AtIDD2, IDD2 | indeterminate(ID)-domain
2 | chr3:18840411-18842950 FORWARD LENGTH=2014
Length=2014
Score = 246 bits (133), Expect = 4e-64
Identities = 383/499 (77%), Gaps = 36/499 (7%)
Strand=Plus/Plus
Query 123 AAGAAGAAGA-GAAATCTCCCAGGAAAT-CCTGATCCGGAAG-CTGAAGTGATAGCTCTA 179
|||||||| | | || ||||| || || |||||||| | || | ||||| |||||| ||
Sbjct 634 AAGAAGAA-ACGTAACCTCCCTGG-CATGCCTGATCCAG-AGTCAGAAGTTATAGCTTTA 690
Query 180 TCCCCCAAGACCCTGA-TGGCTACAAACCGGTTCCTATGCGAGATCTGTGGCAAA-GGTT 237
| | |||| | | | | | || |||||| | || | || || |||||| |||| ||||
Sbjct 691 T-CACCAAAAACATTACTAGCAACAAACAGATTTGTTTGTGAAATCTGTAACAAAGGGTT 749
Query 238 TCCAAAGAGACCA-AAACTTACAGCTTCATCGGCGAGGACACAATCTT-CCATGGAAG-T 294
| ||||||||||| || ||| || |||||||| || ||||||||| || ||||||||| |
Sbjct 750 T-CAAAGAGACCAGAATCTT-CAACTTCATCGTCGTGGACACAAT-TTACCATGGAAGCT 806
Query 295 TGAAG-CAGAGGA-CAAGCAAAGAAGTG-AGAAAACGTGTCTACGTTTGCCCCGAGAAG- 350
| | |||| | ||| |||||||||| |||||| ||||| ||||| || ||||
Sbjct 807 T--CGTCAGA-AATCAAACAAAGAAGTGAAGAAAA-AAGTCTATGTTTG-TCC-TGAAGT 860
Query 351 -ACATGCGTCCACCATC-ACTCC-TCTA-GAGCTCTAGGCGATCTCACCGGAATCAAGAA 406
| || || || || | || || || | | ||| |||| ||||| || |||||||||||
Sbjct 861 TAGTTGTGTTCATCA-CGAC-CCTTC-ACGTGCTTTAGGAGATCTAACTGGAATCAAGAA 917
Query 407 GCA-TTTCTGCCGGAAACACGGCGAGAAGAAGTGGAAGTGCGAGAAATGTGCCAAGAGAT 465
|| ||| || |||||||| || |||||||||||||| || || |||||| | |||| ||
Sbjct 918 ACACTTT-TGTCGGAAACATGGTGAGAAGAAGTGGAAATGTGATAAATGTTCTAAGAAAT 976
Query 466 ACGCAGTCCAATCTGATTGGAAAGCTCATTCCAAGACTTGTGGTACTAGAGAGTACCGTT 525
|||| || |||||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 977 ACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGTACTAAAGAGTATAAAT 1036
Query 526 GCGACTGTGGCAC-CATTTTTTCAAGGCGAGACAGCTTCATCACTCATAGAGCTTTTTGC 584
| || ||||| || | | ||||| ||| | || || || || || ||||||||||||||
Sbjct 1037 GTGATTGTGGTACTC-TGTTTTCTAGGAGGGATAGTTTTATAACGCATAGAGCTTTTTGT 1095
Query 585 GATGCCTTAGCGGAAGAAA 603
||||| || || |||||||
Sbjct 1096 GATGCTTTGGCTGAAGAAA 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71083971720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5