BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948717 Length=1442 Score E Sequences producing significant alignments: (Bits) Value AT5G44160.1 | Symbols: NUC | C2H2-like zinc finger protein | ch... 2170 0.0 AT3G50700.1 | Symbols: AtIDD2, IDD2 | indeterminate(ID)-domain ... 246 4e-64 > AT5G44160.1 | Symbols: NUC | C2H2-like zinc finger protein | chr5:17772941-17775686 FORWARD LENGTH=1724 Length=1724 Score = 2170 bits (1175), Expect = 0.0 Identities = 1351/1435 (94%), Gaps = 16/1435 (1%) Strand=Plus/Plus Query 1 TCAAGAACCCAGAAGAAGACATGACAAGTGAAGTTCTTCAAACAATCTCTAGTGGATCAG 60 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 131 TCAAGAACCCAGAAGAAGACATGACAAGTGAAGTTCTTCAAACAATCTCAAGTGGATCAG 190 Query 61 GTTTTGCT------CAGAGCTCATCAACTCTAGATCATGATGAATCTCTCATCAATCCTC 114 |||||||| |||||||||||||| || |||||||||||||||||||||||||||| Sbjct 191 GTTTTGCTCAGCCACAGAGCTCATCAACCCTGGATCATGATGAATCTCTCATCAATCCTC 250 Query 115 CTCTTGTTAAGAAGAAGAGAAATCTCCCAGGAAATCCTGATCCGGAAGCTGAAGTGATAG 174 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 251 CTCTTGTTAAGAAAAAGAGAAATCTCCCTGGAAATCCTGATCCGGAAGCTGAAGTGATAG 310 Query 175 CTCTATCCCCCAAGACCCTGATGGCTACAAACCGGTTCCTATGCGAGATCTGTGGCAAAG 234 || ||||||||| |||| |||||||||| |||||||||||||| ||| | |||||||||| Sbjct 311 CTTTATCCCCCACGACCTTGATGGCTACGAACCGGTTCCTATGTGAGGTATGTGGCAAAG 370 Query 235 GTTTCCAAAGAGACCAAAACTTACAGCTTCATCGGCGAGGACACAATCTTCCATGGAAGT 294 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 371 GTTTCCAAAGAGACCAAAACTTACAGCTTCATCGGCGAGGACATAATCTTCCATGGAAGT 430 Query 295 TGAAGCAGAGGACAAGCAAAGAAGTGAGAAAACGTGTCTACGTTTGCCCCGAGAAGACAT 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 431 TGAAGCAGAGGACAAGCAAAGAAGTGAGAAAACGTGTCTACGTTTGCCCCGAGAAGACAT 490 Query 355 GCGTCCACCATCACTCCTCTAGAGCTCTAGGCGATCTCACCGGAATCAAGAAGCATTTCT 414 | |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | Sbjct 491 GTGTCCACCATCACTCCTCTAGAGCTCTAGGCGATCTCACTGGAATCAAAAAGCATTTTT 550 Query 415 GCCGGAAACACGGCGAGAAGAAGTGGAAGTGCGAGAAATGTGCCAAGAGATACGCAGTCC 474 ||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 551 GCCGGAAACACGGGGAGAAGAAGTGGACGTGCGAGAAATGTGCTAAGAGATACGCAGTCC 610 Query 475 AATCTGATTGGAAAGCTCATTCCAAGACTTGTGGTACTAGAGAGTACCGTTGCGACTGTG 534 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 611 AATCTGATTGGAAAGCTCATTCCAAGACTTGTGGTACTAGAGAGTACCGTTGCGATTGTG 670 Query 535 GCACCATTTTTTCAAGGCGAGACAGCTTCATCACTCATAGAGCTTTTTGCGATGCCTTAG 594 |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 671 GCACCATTTTCTCAAGGCGAGACAGCTTTATCACTCATAGAGCTTTCTGCGATGCCTTAG 730 Query 595 CGGAAGAAACCGCTAAGATAAACGCAGTGTCTCATCTCAATGGTTTAGCGGCTGCTGGAG 654 |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| Sbjct 731 CGGAAGAAACCGCTAAGATAAACGCAGTGTCTCATCTCAACGGTTTAGCCGCGGCTGGAG 790 Query 655 CAGCAGGATCAGTTAATATCAACTATCAATATCTCATGGGAACATTCATTCCACCGCTTC 714 | |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 791 CCCCAGGATCAGTTAATCTCAACTATCAATATCTCATGGGAACATTCATCCCACCGCTTC 850 Query 715 AACCATTTGTACCGCAACCGCAAACAAATCAAAACCATCATCATCAACATTTTCAGCCAC 774 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 851 AACCATTTGTACCACAACCGCAAACAAATCCAAACCATCATCATCAACATTTTCAGCCAC 910 Query 775 CACCTCCGTCGTCGCTCTCCCTATGGATGGGACAAGATATCGCGCCGCCTCAACCGCAAC 834 || || | ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 911 CAACTTCTTCGTCGCTCTCTCTATGGATGGGACAAGATATCGCGCCGCCTCAACCGCAAC 970 Query 835 CGCAGGACTACGACTGGGTTTTCGGAAACGCTAAGGCAGCGTATGCATGCATTGATAATA 894 || | ||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||| Sbjct 971 CG--G-ACTACGATTGGGTTTTTGGAAACGCTAAGGCAGCGTCTGCTTGCATTGATAATA 1027 Query 895 ATAATACTCACGCTGAGCACATTACGCAAAACGCAAACGCAAGTTTGACCACTACTACTA 954 |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1028 ATAATACTCACGATGAGCAGATTACGCAAAACGCAAACGCAAGTTTGACCACTACCACTA 1087 Query 955 CTCTCTCTGTCCCTTCTTTATTCAGCAATGACCAACCACAAAACGCAAACGCAAACTCAA 1014 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 1088 CTCTCTCTGCCCCTTCTTTATTCAGCAGCGACCAACCACAAAACGCAAACGCAAATTCAA 1147 Query 1015 ACGTGAATATGTCCGCAACAGCGTTACTACAGAAAGCTGCTGAAATTGGCGTTACTTCTA 1074 |||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| Sbjct 1148 ACGTGAATATGTCCGCGACAGCTTTACTACAGAAAGCTGCTGAAATTGGCGCTACTTCTA 1207 Query 1075 CAACGACGGCGGCGACTAACGACC-AGTCAACGTTTCTTCAAAGTTTCCCGCTTAAATCC 1133 |||| || || ||||| || |||| | ||||||||||||||||||||||||||||||||| Sbjct 1208 CAACAACCGCAGCGACCAATGACCCA-TCAACGTTTCTTCAAAGTTTCCCGCTTAAATCC 1266 Query 1134 TCCGATCAAACCACCACTTATGACGGTGGCGAAAAGTTCTTTGCTTTGTTCGGGTCTAAC 1193 ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 1267 ACCGATCAAACCACCAGTTATGACAGTGGCGAAAAGTTTTTTGCTTTGTTCGGGTCTAAC 1326 Query 1194 AACAACATTGGGTTAATGAGTCATAGTCATAATCATCAGGAGATTGAGAACGCTAGAAAT 1253 |||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||| Sbjct 1327 AACAACATTGGGTTAATGAGTCGTAGTCATGATCATCAAGAGATCGAGAACGCTAGAAAT 1386 Query 1254 GACGTTACGGTTGCGTCTGCGTTGGATGAATTACAGAATTACCCTTGGAAACGTAGAAGA 1313 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1387 GACGTTACGGTTGCGTCTGCCTTGGATGAATTACAGAATTACCCTTGGAAACGTAGAAGA 1446 Query 1314 GTTGATGGTGGAGG--A-G-GAGCTGGAGGAGGGCAAACTCGGGATTTCCTCGGGGTCGG 1369 |||||||||||||| | | | | ||||||||||||||||||||||||||||||||| || Sbjct 1447 GTTGATGGTGGAGGTGAAGTGGG-TGGAGGAGGGCAAACTCGGGATTTCCTCGGGGTTGG 1505 Query 1370 TGTACAAACGTTGTGCCATCCATCGTCTATCAATGGATGGATTTGAAACAGTTTA 1424 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1506 TGTACAAACGTTGTGCCATCCATCGTCTATCAATGGATGGATTTGAAAGAGTTTA 1560 > AT3G50700.1 | Symbols: AtIDD2, IDD2 | indeterminate(ID)-domain 2 | chr3:18840411-18842950 FORWARD LENGTH=2014 Length=2014 Score = 246 bits (133), Expect = 4e-64 Identities = 383/499 (77%), Gaps = 36/499 (7%) Strand=Plus/Plus Query 123 AAGAAGAAGA-GAAATCTCCCAGGAAAT-CCTGATCCGGAAG-CTGAAGTGATAGCTCTA 179 |||||||| | | || ||||| || || |||||||| | || | ||||| |||||| || Sbjct 634 AAGAAGAA-ACGTAACCTCCCTGG-CATGCCTGATCCAG-AGTCAGAAGTTATAGCTTTA 690 Query 180 TCCCCCAAGACCCTGA-TGGCTACAAACCGGTTCCTATGCGAGATCTGTGGCAAA-GGTT 237 | | |||| | | | | | || |||||| | || | || || |||||| |||| |||| Sbjct 691 T-CACCAAAAACATTACTAGCAACAAACAGATTTGTTTGTGAAATCTGTAACAAAGGGTT 749 Query 238 TCCAAAGAGACCA-AAACTTACAGCTTCATCGGCGAGGACACAATCTT-CCATGGAAG-T 294 | ||||||||||| || ||| || |||||||| || ||||||||| || ||||||||| | Sbjct 750 T-CAAAGAGACCAGAATCTT-CAACTTCATCGTCGTGGACACAAT-TTACCATGGAAGCT 806 Query 295 TGAAG-CAGAGGA-CAAGCAAAGAAGTG-AGAAAACGTGTCTACGTTTGCCCCGAGAAG- 350 | | |||| | ||| |||||||||| |||||| ||||| ||||| || |||| Sbjct 807 T--CGTCAGA-AATCAAACAAAGAAGTGAAGAAAA-AAGTCTATGTTTG-TCC-TGAAGT 860 Query 351 -ACATGCGTCCACCATC-ACTCC-TCTA-GAGCTCTAGGCGATCTCACCGGAATCAAGAA 406 | || || || || | || || || | | ||| |||| ||||| || ||||||||||| Sbjct 861 TAGTTGTGTTCATCA-CGAC-CCTTC-ACGTGCTTTAGGAGATCTAACTGGAATCAAGAA 917 Query 407 GCA-TTTCTGCCGGAAACACGGCGAGAAGAAGTGGAAGTGCGAGAAATGTGCCAAGAGAT 465 || ||| || |||||||| || |||||||||||||| || || |||||| | |||| || Sbjct 918 ACACTTT-TGTCGGAAACATGGTGAGAAGAAGTGGAAATGTGATAAATGTTCTAAGAAAT 976 Query 466 ACGCAGTCCAATCTGATTGGAAAGCTCATTCCAAGACTTGTGGTACTAGAGAGTACCGTT 525 |||| || |||||||||||||||||||||||||||| ||||||||||| |||||| | Sbjct 977 ACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGTACTAAAGAGTATAAAT 1036 Query 526 GCGACTGTGGCAC-CATTTTTTCAAGGCGAGACAGCTTCATCACTCATAGAGCTTTTTGC 584 | || ||||| || | | ||||| ||| | || || || || || |||||||||||||| Sbjct 1037 GTGATTGTGGTACTC-TGTTTTCTAGGAGGGATAGTTTTATAACGCATAGAGCTTTTTGT 1095 Query 585 GATGCCTTAGCGGAAGAAA 603 ||||| || || ||||||| Sbjct 1096 GATGCTTTGGCTGAAGAAA 1114 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71083971720 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5