BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948729

Length=1015
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48990.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   252    6e-66
  AT5G48980.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   215    8e-55


> AT5G48990.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr5:19862289-19863625 FORWARD LENGTH=1337
Length=1337

 Score =  252 bits (136),  Expect = 6e-66
 Identities = 226/268 (84%), Gaps = 12/268 (4%)
 Strand=Plus/Plus

Query  742   GGTTTGGAAGGACTGCCTAAATTTGTTACTTATAGT-CGTGTTAAACTGGCAGATTATGG  800
             ||||| ||||| || ||||| |||| ||  |||||| | ||||||| | || || |||||
Sbjct  919   GGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTAC-TGTTAAATTAGCGGAATATGG  977

Query  801   TGGAAATATGGCAGTTTTGTGGGACAAGTATGCACCTGCAAGTGGGTATATGGATAAGAT  860
              || ||  |||  ||||||||||||||||||| | ||||||||||||||| ||| |||||
Sbjct  978   CGGGAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTGCAAGTGGGTATAAGGAGAAGAT  1037

Query  861   GATTTGGTGTGCAGAGATTTCGCTTGAAAGGCGAAACAGTGAAGAGATTTGGGGGAAGGT  920
             ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct  1038  GATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTTGGGGGAAGGT  1097

Query  921   CAAGTGGTTTGATGCTGTGCTTAAAGTCCCCAAGTCTTATGAATTTGTGCATGAT-CT--  977
             | ||||||||||||| || |||| |||||| ||||||||| |||| || | || | ||  
Sbjct  1098  CGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGT-C-TG-TGCTAA  1154

Query  978   -TGCTGCTACTGTTTGAT-GAATGACTC  1003
              | ||||||||||||||| || ||||||
Sbjct  1155  AT-CTGCTACTGTTTGATTGA-TGACTC  1180


> AT5G48980.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr5:19860708-19862018 FORWARD LENGTH=1311
Length=1311

 Score =  215 bits (116),  Expect = 8e-55
 Identities = 220/269 (82%), Gaps = 11/269 (4%)
 Strand=Plus/Plus

Query  742   GGTTTGGAAGGACTGCCTAAATTTGT-TACTTATAGTCGTGTTAAACTGGCAGATTATGG  800
             ||||| ||||| || ||||| ||| | ||  |||  | ||||| || |||| || |||||
Sbjct  965   GGTTTAGAAGGGCTACCTAAGTTT-TCTAGATATTCTAGTGTTCAATTGGCGGAATATGG  1023

Query  801   TGGAAATATGGCAGTTTTGTGGGACAAGTATGCACCTGCAAGTGGGTATATGGATAAGAT  860
              || ||  |||  ||||||||||||||||||| |||||| |||||||||| ||| |||||
Sbjct  1024  CGGGAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAGGAGAAGAT  1083

Query  861   GATTTGGTGTGCAGAGATTTCGCTTGAAAGGCGAAACAGTGAAGAGATTTGGGGGAAGGT  920
             |||||||||||||||||||||||| ||||  || ||| || |||||||||||||||| ||
Sbjct  1084  GATTTGGTGTGCAGAGATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGGGGGAACGT  1143

Query  921   CAAGTGGTTTGATGCTGTGCTTAAAGTCCCCAAGTCTTATGAA-T-TTGTGCATGAT-CT  977
               ||||||||||||||||||||| |||||| ||||||||  || | |||||  || | ||
Sbjct  1144  TGAGTGGTTTGATGCTGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTG--TGCTACT  1201

Query  978   TGCTGCTACTGTTTGAT--GAATGACTCG  1004
              ||||||||| ||||||  || |||||||
Sbjct  1202  -GCTGCTACTCTTTGATTCGA-TGACTCG  1228



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 49731805530


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5