BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948730
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44070.1 | Symbols: CAD1, ARA8, ATPCS1, PCS1 | phytochelatin... 2361 0.0
AT1G03980.1 | Symbols: ATPCS2, PCS2 | phytochelatin synthase 2 ... 1098 0.0
> AT5G44070.1 | Symbols: CAD1, ARA8, ATPCS1, PCS1 | phytochelatin
synthase 1 (PCS1) | chr5:17734738-17737859 FORWARD LENGTH=1783
Length=1783
Score = 2361 bits (1278), Expect = 0.0
Identities = 1427/1500 (95%), Gaps = 5/1500 (0%)
Strand=Plus/Plus
Query 3 AAATCAAGCCGTGTAAAAATGGCTATGGCGAGTTTATATCGGCGATCTCTTCCTTCTCCT 62
||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AAAACAAGCAGTG-AAAAATGGCTATGGCGAGTTTATATCGGCGATCTCTTCCTTCTCCT 180
Query 63 CCGGCGATTGACTTTTCTTCTGCCGAAGGCAAGCTAATCTTCAATGAAGCGCTTCAGAAA 122
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCGGCCATTGACTTTTCTTCCGCCGAAGGCAAGCTAATCTTCAATGAAGCGCTTCAGAAA 240
Query 123 GGAACTATGGAAGGATTTTTCAGGTTGATTTCGTATTTTCAGACGCAGTCTGAACCTGCG 182
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 241 GGAACTATGGAAGGATTTTTCAGGTTGATTTCGTATTTTCAGACACAATCCGAACCTGCG 300
Query 183 TATTGTGGCTTGGCTAGTCTTTCTGTGGTGTTGAATGCTCTTTCTATTGATCCTGGACGC 242
|||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 301 TATTGTGGTTTGGCTAGTCTCTCAGTGGTGTTGAATGCTCTTTCTATCGATCCTGGACGT 360
Query 243 AAATGGAAAGGGCCTTGGAGGTGGTTTGATGAATCAATGTTGGACTGCTGCGAGCCTCTT 302
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 361 AAATGGAAAGGGCCTTGGAGGTGGTTTGATGAATCAATGTTGGATTGCTGCGAACCTCTG 420
Query 303 GAAGTGGTGAAGGAGAAGGGAATTTCATTTGGGAAAGTTGTCTGTTTGGCTCATTGTTCA 362
||||| |||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 421 GAAGTAGTGAAGGAAAAAGGCATTTCATTTGGAAAAGTTGTCTGTTTGGCTCATTGTTCA 480
Query 363 GGAGCAAAAGTTGAGGCTTTCCGTACAAGTCAGAGCACCATTGAGGATTTCCGCAAATTT 422
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 GGAGCAAAAGTTGAGGCTTTCCGTACAAGTCAGAGCACCATTGATGATTTCCGCAAATTT 540
Query 423 GTCTTGAAATGCACGAGTTCTGAGAATTGCCATATGATCTCATCATATCACAGAGGTGTT 482
||| | ||||||||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 541 GTCGTCAAATGCACGAGTTCTGAGAATTGTCATATGATCTCAACATATCACCGAGGTGTA 600
Query 483 TTTATGCAGACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGAT 542
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTAAGCAGACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGAT 660
Query 543 ATGGCTTTGATTCTTGATGTTGCTCGTTTCAAGTATCCTCCTCACTGGGTTCCTCTTAAA 602
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 ATGGCTTTGATTCTTGATGTTGCTCGTTTCAAGTATCCCCCTCACTGGGTTCCTCTTAAA 720
Query 603 CTTCTTTGGGAAGCCATGGACAGCATTGATGAGTCAACTGGGAAACGTAGAGGGTTCATG 662
||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 721 CTTCTTTGGGAAGCCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGGGTTCATG 780
Query 663 CTCATATCTAGACCCCACCGAGAACCCGGATTGCTCTATACTTTGAGCTGCAAGGATGAA 722
|||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 781 CTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTGAGCTGCAAGGATGAA 840
Query 723 AGCTGGATCGACATAGCAAAGTATTTGAAGGAAGATGTTCCACGTCTTGTAAGTTCACAA 782
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 841 AGCTGGATCGAAATAGCCAAGTATTTGAAGGAAGATGTTCCTCGTCTTGTAAGTTCACAG 900
Query 783 CATGTAGACTCTGTGGACAAAATCATATCTGTTGTGTTCAAGTCACTTCCATCAAACTTC 842
|||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 901 CATGTAGATTCTGTGGAGAAAATCATATCAGTTGTGTTCAAGTCACTTCCATCAAATTTC 960
Query 843 AACCAATTCATCAGATGGGTGGCTGAGATCAGAATAACAGAGGACTCAAACCAAATTCTC 902
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 961 AACCAATTCATCAGATGGGTGGCTGAGATCCGAATTACAGAGGACTCAAACCAAAATCTC 1020
Query 903 AGCGCAGAGGAGAAGTC-ACGGCTGAAACTAAAGCAATTGGTGCTGAAAGAAGTGCACGA 961
||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 1021 AGCGCAGAGGAGAAGTCTA-GGCTGAAACTAAAGCAATTGGTGCTGAAGGAAGTGCACGA 1079
Query 962 AACTGAACTGTTCAAACACATCAATAAGTTCTTATCCTCAGTGGGTTACGAAGACAGTCT 1021
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1080 AACTGAACTGTTCAAACACATCAATAAGTTCTTATCCACAGTGGGTTATGAAGACAGTCT 1139
Query 1022 GACATATGCTGCTGCAAAGGCTTGTTGCCAAGGAGCTGAAATCTTATCTGGAAGCCCATC 1081
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1140 GACTTATGCTGCTGCAAAGGCTTGTTGCCAAGGAGCTGAAATCTTATCCGGAAGCCCATC 1199
Query 1082 AAAAGAGTTCTGTTGTCGGGAAACTTGTGTGAAATGCATCAAAGGTCCTGATGACTCTGA 1141
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1200 AAAAGAGTTTTGTTGTCGGGAAACTTGCGTGAAATGCATCAAAGGTCCTGATGACTCTGA 1259
Query 1142 AGGCACGGTGGTGACTGGAGTTGTGGTGCGTGATGGGAGTGAACAAAAGATTGATCTGTT 1201
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1260 AGGCACGGTGGTGACTGGAGTTGTGGTGCGTGATGGGAATGAACAAAAGGTTGATCTGTT 1319
Query 1202 GGTGCCATCGACCCAAACTGAGTGTGAATGTGGTCCGGAAGCAAATTATCCAGCAGGAAA 1261
||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1320 AGTGCCATCGACGCAAACTGAGTGTGAATGTGGTCCTGAAGCAACTTATCCAGCAGGAAA 1379
Query 1262 CGATGTGTTTACTGCACTTCTGTTGGCTTTGCCTCCACAGACATGGTCAGGGATCAAAGA 1321
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1380 CGATGTGTTCACTGCACTTCTATTGGCTTTACCTCCACAGACATGGTCAGGGATCAAAGA 1439
Query 1322 CCAAGCTCTTATGCATGAAATGAAGCAGCTCATTTCCATGGCTTCCCTCCCAACTTTGCT 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CCAAGCTCTTATGCATGAAATGAAGCAGCTCATTTCCATGGCTTCCCTCCCAACTTTGCT 1499
Query 1382 TCAAGAAGAGGTATTGCATCTTCGACGACAACTTCAGCTGCTAAAACGATGCCAAGAGAA 1441
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1500 TCAAGAAGAGGTATTGCATCTTCGACGGCAACTTCAGCTGCTAAAACGATGCCAAGAGAA 1559
Query 1442 CAAAGAAGAGGAAGATCTCGCTGCTCCTGCCTATT-GATTCATCGTCCCAAATTCACTCT 1500
||| |||||||| |||||||||||||||||||||| | ||||| ||||||||| | ||||
Sbjct 1560 CAAGGAAGAGGATGATCTCGCTGCTCCTGCCTATTAG-TTCATTGTCCCAAATCCTCTCT 1618
> AT1G03980.1 | Symbols: ATPCS2, PCS2 | phytochelatin synthase
2 | chr1:1018570-1022108 REVERSE LENGTH=2337
Length=2337
Score = 1098 bits (594), Expect = 0.0
Identities = 955/1128 (85%), Gaps = 30/1128 (3%)
Strand=Plus/Plus
Query 20 AATGGCTATGGCGAGTTTATATCGGCGATCTCTTCCTTCTCCTCCGGCGATTGACTTT-T 78
|||| ||||||||||||| |||||||| |||| | ||| ||||||||||| || |||
Sbjct 237 AATGTCTATGGCGAGTTTGTATCGGCGGTCTC-T--TTCCCCTCCGGCGATAGA-TTTCG 292
Query 79 CTTCTGCCGAAGGCAAGCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGAT 138
||||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 293 CTTCTTTTGAAGGAAAGCAAATCTTCAATGAAGCGCTTCAGAAAGGCACTATGGAAGGAT 352
Query 139 TTTTCAGGTTGATTTCGTATTTTCAGACGCAGTCTGAACCTGCGTATTGTGGCTTGGCTA 198
||||| || ||||||| ||||||||||| |||||||| || || | ||||||||| ||||
Sbjct 353 TTTTCGGGCTGATTTCTTATTTTCAGACACAGTCTGAGCCAGCTTTTTGTGGCTTAGCTA 412
Query 199 GTCTTTCTG-TGGTGTTGAATGCTCTTTCTATTGATCCTGGACGCAAA-TGGAAAGGGCC 256
||||||| | |||| |||||| ||||||||||||| || ||| | ||| |||||||||||
Sbjct 413 GTCTTTC-GATGGTTTTGAATTCTCTTTCTATTGACCCGGGAAG-AAAGTGGAAAGGGCC 470
Query 257 TTGGAGGTGGTTTGATGAATCAATGTTGGACTGCTGCGAGCCTCTTGAAGTGGTGAAGGA 316
||||||||||||||||||||||||| |||| || |||||||| |||||| | ||||||||
Sbjct 471 TTGGAGGTGGTTTGATGAATCAATGCTGGAATGTTGCGAGCCGCTTGAAATAGTGAAGGA 530
Query 317 GAAGGGAATTTCATTTGGGAAAGTTGTCTGTTTGGCTCATTGTTCAGGAGCAAAAGTTGA 376
|| || ||||||||||| ||||| |||||||| ||||||| ||||||||||||||| ||
Sbjct 531 TAAAGGCATTTCATTTGGAAAAGTGGTCTGTTTAGCTCATTCTTCAGGAGCAAAAGTCGA 590
Query 377 GGCTTTCCGTACAAGTCAGAGCACCATTGAGGATTTCCGCAAATTTGTCTTGAAATGCAC 436
|||||||| |||| ||||||||||||||| ||||||||||||| ||| | ||||| |
Sbjct 591 AGCTTTCCGCACAAATCAGAGCACCATTGATGATTTCCGCAAATATGTGGTCAAATGTTC 650
Query 437 GAGTTCTGAGAATTGCCATATGATCTCATCATATCACAGAG-GTGTTTTTATGCAGACTG 495
| |||||| ||||| |||||||||||| ||||||| || | || | | ||||||||
Sbjct 651 AACTTCTGATAATTGTCATATGATCTCAACATATCATAG-GCAAGTACTCAAGCAGACTG 709
Query 496 GGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGATATGGCTTTGATTC 555
| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 710 GAACTGGCCACTTTTCACCTATTGGTGGTTATAATGCTGAAAGAGATATGGCTTTGATTC 769
Query 556 TTGATGTTGCTCGTTTCAAGTATCCTCCTCACTGGGTTCCTCTTAAACTTCTTTGGGAAG 615
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 770 TTGATGTCGCTCGTTTCAAGTATCCTCCTCACTGGGTTCCTCTTAAACTTCTTTGGGATG 829
Query 616 CCATGGACAGCATTGATGAGTCAACTGGGAAACGTAGAGGGTTCATGCTCATATCTAGAC 675
||||||| || |||||| ||||||| |||| |||||||||||||||||| ||||| ||||
Sbjct 830 CCATGGATAGTATTGATCAGTCAACAGGGAGACGTAGAGGGTTCATGCTTATATCAAGAC 889
Query 676 CCCACCGAGAACCCGGATTGCTCTATACTTTGAGCTGCAAGGATGAAAGCTGGATC-GAC 734
||||| ||||||| |||||||||||||| || || || |||||||| ||||||||| | |
Sbjct 890 CCCACAGAGAACCAGGATTGCTCTATACATTAAGTTGTAAGGATGAGAGCTGGATCAG-C 948
Query 735 ATAGCAAAGTATTTGAAGGAAGATGTTCCACGTCTTGTAAGTTCACAACATGTAGACT-C 793
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||| || | |
Sbjct 949 ATTGCAAAGTATTTGAAGGAAGATGTTCCTCGTCTTGTAAGCTCACAACATGTTGA-TAC 1007
Query 794 TGTGGACAA-AATCATATCTGTTGTGTTCAAGTCACTTCCATCAAACTTCAACCAATTCA 852
| | || || |||| ||| |||||| ||||||||||||||| |||| ||||||||||| |
Sbjct 1008 TATTGA-AAGAATCTTATATGTTGTATTCAAGTCACTTCCAGCAAATTTCAACCAATTTA 1066
Query 853 TCAGATGGGTGGCTGAGAT-CAGAATAACAGAGGAC-TCAAACCAAATTCTCAGCGCAGA 910
||| |||| |||||||||| | ||| ||||||||| | ||| |||| ||| ||| ||||
Sbjct 1067 TCAAATGGATGGCTGAGATTC-GAAGAACAGAGGATGT-AAATCAAAATCTTAGCTCAGA 1124
Query 911 GGAGAAGTCACGGCTGAAACTAAAGCAATTGGTGCTGAAAGAAGTGCACGAAACTGAACT 970
||||| ||| |||| ||| |||||||| | | |||||| ||||||| |||||| ||||
Sbjct 1125 AGAGAAATCAAGGCTCAAATTAAAGCAAGAGTTACTGAAACAAGTGCAAGAAACTAAACT 1184
Query 971 GTTCAAACACATCAATAAGTT-CTTATCCTCAGTGGGTTACGAAGACAGTCTGACATATG 1029
|||||| || | ||||||| || ||||| ||| | ||||||||| |||| ||||||
Sbjct 1185 GTTCAAGCATGTGGATAAGTTTCTC-TCCTCTGTG--T-ACGAAGACAATCTGCCATATG 1240
Query 1030 CTGCTGCAAAGGCTTGTTGCCAAGGAGCTGAAATCTTATCTGGA-A-GCCCATCAAAAGA 1087
|||||| |||| || ||| | |||| |||||||||||| ||| | | |||| | ||
Sbjct 1241 TTGCTGCTAAGGTTTATTGTGACGGAGATGAAATCTTATCGGGATATGA--ATCAGATGA 1298
Query 1088 GTTCTGTTGTCGGGAAACTTGTGTGAAATGCATCAAAGGTCCTGATGA 1135
| ||||||| |||||||||||| ||||| |||||||||| || |||
Sbjct 1299 ATCCTGTTGTAAGGAAACTTGTGTCAAATGTATCAAAGGTCTTGGTGA 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73995603330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5