BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948737
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44020.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 1358 0.0
AT1G04040.1 | Symbols: | HAD superfamily, subfamily IIIB acid ... 418 5e-116
AT1G04030.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 130 2e-29
> AT5G44020.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr5:17712409-17714336 FORWARD LENGTH=1133
Length=1133
Score = 1358 bits (735), Expect = 0.0
Identities = 815/854 (95%), Gaps = 4/854 (0%)
Strand=Plus/Plus
Query 17 TCAACATGGCTAGATCCTTGTTGCTCTCGCTAACTCTCGC-TGTCCTCTTCACCGGAATG 75
|||||||||||||||||||||||||||||||||| ||| | | |||||||| |||||||
Sbjct 20 TCAACATGGCTAGATCCTTGTTGCTCTCGCTAACCCTCACAT-TCCTCTTCGCCGGAATT 78
Query 76 GTCTCAGCTCGTGACTGGAACATCCTGAACCAGCTCAAAGGAACCACAACCACAACAAAG 135
|||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 79 GTCTCAGCTCGTGACTGGAACATCCTGAGCCAGCTCAAAGGAACCACAACCACCACGAAG 138
Query 136 ACTAGCCAGACCGGTC-TCACATCTTTGAAAGGACCAAACCTAAACGGATACTGCGAAAG 194
|||||||| ||||| | ||||||||||||||| || ||||||||||||||||| || ||
Sbjct 139 ACTAGCCAAACCGG-CGTCACATCTTTGAAAGCTCCCAACCTAAACGGATACTGTGAGAG 197
Query 195 CTGGAGAGTCAACGTGGAGCTTAACAACATCAGGGACTTTTTGGTTGTGCCACAGGAATG 254
|||||||||||||||||||||||||||||| ||||||||| ||| || |||||||||||
Sbjct 198 CTGGAGAGTCAACGTGGAGCTTAACAACATAAGGGACTTTAAGGTGGTTCCACAGGAATG 257
Query 255 TGTATGGTTCGTCCAAAAGTACATGACCTCATCTCAATACGAGGATGACGTGGAGAGAGC 314
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 258 TGTATGGTTCGTCCAAAAGTACATGACCTCATCTCAATACGAAGATGACGTGGAGAGAGC 317
Query 315 CGTTGATGAAGCCATCCTCTACCTCGGAAAAACTTGTTGCGAAAAGAAGAAATGCGATGG 374
||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 318 CGTCGATGAAGCCATCCTCTACCTCGGAAAAACTTGTTGCGAGAAGAAGACATGCGATGG 377
Query 375 CATGGATGCTTGGATCTTTGACATTGATGACACTCTTCTCTCCACCATTCCTTACCACAA 434
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 378 CATGGATGCTTGGATCTTTGACATTGATGACACTCTTCTCTCAACCATTCCTTACCACAA 437
Query 435 GAGCAACGGCTGTTTCGGTGGTGAGCAATTGAACACGACCAAGTTCGAGGAATGGCAAAA 494
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 438 GAGCAACGGTTGTTTCGGTGGTGAGCAACTGAACACGACCAAGTTCGAGGAATGGCAAAA 497
Query 495 ATCGGGCAAGGCACCAGCGGTTCCAAACATGGTGAAGTTGTACCATGAGATCAGAGAGAG 554
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 498 TTCGGGCAAGGCACCAGCGGTTCCACACATGGTGAAGTTGTACCATGAGATCAGAGAGAG 557
Query 555 AGGTTTCAAGATCTTTTTGATCTCTTCTCGTAAAGAGTATCTCAGATCTGCCACCGTCGA 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 AGGTTTCAAGATCTTTTTGATCTCTTCTCGTAAAGAGTATCTCAGATCTGCCACCGTCGA 617
Query 615 AAACCTTATCGAAGCCGGTTACCACGGCTGGTCTAACCTCCTTCTCAGGGGAGAAGATGA 674
||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 618 AAATCTTATTGAAGCCGGTTACCACAGCTGGTCTAACCTCCTTCTGAGGGGAGAAGATGA 677
Query 675 TGAGAAGAAGAGTGTGAGCCAATACAAAGCAGATTTGAGGTCATGGCTTACAAGTCTTGG 734
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 678 TGAAAAGAAGAGTGTGAGCCAATACAAAGCAGATTTGAGGACATGGCTTACAAGTCTTGG 737
Query 735 GTACCGAGTTTGGGGAGTGATGGGTGCACAATGGAACAGCTTCTCTGGTTGTCCAGTTCC 794
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GTACAGAGTTTGGGGAGTGATGGGTGCACAATGGAACAGCTTCTCTGGTTGTCCAGTTCC 797
Query 795 CAAGAGAACCTTCAAGCTCCCTAACTCCATCTACTATGTCGCCTGATCAAATCTTATTTA 854
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 798 CAAGAGAACCTTCAAGCTCCCTAACTCCATCTACTATGTCGCCTGATTAAATCTTATTTA 857
Query 855 CTAACAAAACAATA 868
||||||||||||||
Sbjct 858 CTAACAAAACAATA 871
> AT1G04040.1 | Symbols: | HAD superfamily, subfamily IIIB acid
phosphatase | chr1:1042362-1043864 REVERSE LENGTH=1063
Length=1063
Score = 418 bits (226), Expect = 5e-116
Identities = 545/694 (79%), Gaps = 42/694 (6%)
Strand=Plus/Plus
Query 173 ACCT-AAACGGATACTGCGAAAGCTGGA-GAGTCAACGTGG-AGCTTAACAACATCAGGG 229
|||| ||| |||||||| |||||||||| || ||||||||| || || ||||||||||
Sbjct 194 ACCTGAAA-GGATACTGTGAAAGCTGGAGGA-TCAACGTGGAAG-TTCACAACATCAGAA 250
Query 230 ACTT-TTTGGTTGTGCCACAGGAATGTGTATGGTTCGTCCAA-AAGTACATGACCTCATC 287
| || | || ||||| || || ||||||| | | | || | |||||||| |||||
Sbjct 251 AGTTCGAT-GTGGTGCCTCAAGAGTGTGTATCGCACAT-TAAGGATTACATGACGTCATC 308
Query 288 TCAATACGAGGATGACGTGGAGAGAGCCGTTGATGAAGCCA-TCCTCTACCTCGGAAAAA 346
|| ||| |||||||||||| |||| |||||||||| | || || || | |||| |
Sbjct 309 GCAGTACAAGGATGACGTGGCGAGAACCGTTGATGAGGTCATTCTTC-ATTTCGG--GAG 365
Query 347 CTTGTTGC-G-A-AAAGAAGAAATGCGATGGCATGGATGCTTGGATCTTTGACATTGATG 403
| || ||| | | ||| || || || |||||||| |||||||||||||| || ||||
Sbjct 366 CATG-TGCTGTAGCAAGTCTAAGTGTGACGGCATGGACGCTTGGATCTTTGATATCGATG 424
Query 404 ACACTCTTCTCTCCACCATTCCTTACCACAAGAGCAACGGCTGT-TTCGGTGGTGAGCAA 462
|||| |||||||| ||||| ||||||||||||| || |||| | ||||| || ||| ||
Sbjct 425 ACACGCTTCTCTCTACCATCCCTTACCACAAGAAAAATGGCT-TCTTCGGAGGAGAGAAA 483
Query 463 TTGAACACGACCAAGTTCGAGGAATGGCA-A-A-AATCG-GGCAAGGCACCAGCGGTTCC 518
|||||| | || || |||||||| ||| | | | || | | || |||||||| || ||
Sbjct 484 TTGAACTCAACGAAATTCGAGGATTGG-ATACAGAA--GAAG-AAAGCACCAGCAGTGCC 539
Query 519 AAACATGGTGAAGTTGTACCATGAGATCAGAGAGAGAGG-TTTCAAGATCTTTTTGATCT 577
| ||||| ||| |||||||| || |||||||| ||||| || |||||||| |||||||
Sbjct 540 ACACATGAAGAAATTGTACCACGACATCAGAGAAAGAGGCATT-AAGATCTTCTTGATCT 598
Query 578 CTTCTCGTAAAGAGTATCTCAGATCTGCCACCGTCGAAAACCTTATCGAAGCCGGTTACC 637
|||| || ||||| |||||||| |||||||||||||| ||||| ||| |||||||||||
Sbjct 599 CTTCCCGGAAAGAATATCTCAGGTCTGCCACCGTCGACAACCTCATCCAAGCCGGTTACT 658
Query 638 ACGGCTGGTCTAACCTCCTTCTCAGGGGAG-AAGATGATGAG-AAGAA-GAGTGTGAGCC 694
| |||||||| ||||| | |||||||| | ||| ||| || || || || |||| |
Sbjct 659 ATGGCTGGTCCAACCTAATGCTCAGGGG-GCTAGAAGATCAGCAA-AAGGA-AGTGAAAC 715
Query 695 AATACAAAG-CAGATTTGAGGTCATGGCTTACAAGTCTTGGGTACCGAGTTTGGGGAGTG 753
||||| ||| |||| ||| |||||| | |||||||| ||| |||| |||||||||
Sbjct 716 AATAC-AAGTCAGAGAAGAGAAAATGGCTAATGAGTCTTGGTTACAGAGTCTGGGGAGTG 774
Query 754 ATGGGTGCA-CAATGGAACAGCTTCT-CTGGTTGTCCAGTTCCCAAGAGAACCTTCAAGC 811
||||||| | ||||||| ||||| | | || ||||| |||||| ||||||||||||||
Sbjct 775 ATGGGTG-ACCAATGGAGTAGCTT-TGCAGGCTGTCCTCTTCCCAGGAGAACCTTCAAGC 832
Query 812 TCCCTAACTCCATCTACTATGTCGCCTGATCAAA 845
||||||||||||||||||||||||||||||||||
Sbjct 833 TCCCTAACTCCATCTACTATGTCGCCTGATCAAA 866
> AT1G04030.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G44040.1);
Has 1835 Blast hits to 1511 proteins in 238 species: Archae
- 7; Bacteria - 164; Metazoa - 377; Fungi - 135; Plants -
187; Viruses - 22; Other Eukaryotes - 943 (source: NCBI BLink).
| chr1:1040383-1042892 FORWARD LENGTH=1846
Length=1846
Score = 130 bits (70), Expect = 2e-29
Identities = 106/123 (86%), Gaps = 4/123 (3%)
Strand=Plus/Minus
Query 717 ATGGCTTACAAGTCTTGGGTACCGAGTTTGGGGAGTGATGGGTGCA-CAATGGAACAGCT 775
|||||| | |||||||| ||| |||| |||||||||||||||| | ||||||| ||||
Sbjct 1641 ATGGCTAATGAGTCTTGGTTACAGAGTCTGGGGAGTGATGGGTG-ACCAATGGAGTAGCT 1583
Query 776 TCT-CTGGTTGTCCAGTTCCCAAGAGAACCTTCAAGCTCCCTAACTCCATCTACTATGTC 834
| | | || ||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1582 T-TGCAGGCTGTCCTCTTCCCAGGAGAACCTTCAAGCTCCCTAACTCCATCTACTATGTC 1524
Query 835 GCC 837
|||
Sbjct 1523 GCC 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42347385921
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5