BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948747
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43960.1 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 2252 0.0
> AT5G43960.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr5:17688788-17691939 REVERSE LENGTH=2005
Length=2005
Score = 2252 bits (1219), Expect = 0.0
Identities = 1340/1399 (96%), Gaps = 6/1399 (0%)
Strand=Plus/Plus
Query 1 GATCTTGGGTTTTGTTAAATAATGGCGACTCCTTATCCTGGAGCGACGCAGGTGGGTTCT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 GATCTTGGGTTTTGTTAAATAATGGCGACTCCTTATCCTGGAGCGACGCAGGTGGGTTCG 325
Query 61 TACTTTGTTGGGCAGTATTATCAAGTGTTGCAGCAACAGCCAGATCTTATTCATCAGTTT 120
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 326 TACTTTGTGGGGCAGTATTATCAAGTGTTGCAGCAGCAGCCAGATCTTATTCATCAGTTT 385
Query 121 TATTCTGAGCCTAGTAGAGCTATTCGTATCGATGGTGATTCCACCGAGACTGCTAATACT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 386 TATTCTGAGCCTAGTAGAGCTATTCGTATCGATGGTGATTCCACCGAGACTGCTAATTCT 445
Query 181 TTACTGCATATTCATAACATGGTTATGTCACTGAACTTCACTGCGATTGAAGTGAAGACT 240
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 446 TTGCTGCATATTCATAACATGGTTATGTCACTGAATTTCACTGCGATTGAAGTGAAGACG 505
Query 241 ATCAATTCAGTCGAGTCGTGGGAAGGTGGTGTTCTTGTGGTGATTTCAGGCTCTGTGAAA 300
|| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 506 ATTAATTCAGTCGAGTCGTGGGAAGGTGGTGTTCTTGTGGTGGTTTCAGGATCTGTGAAA 565
Query 301 ACAAAGGAATTTACCAACAGAAGGAGTTTCGTGCAGACCTTTTTTCTCGCTCCTCAGGAA 360
|| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 566 ACCAAGGAATTTAGCAACAGAAGGAGTTTTGTGCAGACCTTTTTTCTCGCTCCTCAGGAA 625
Query 361 AAGGGTTATTTTGTTCTCAATGATATATTTCAGTTTGTTGATGAGGGGACTGTTTACTAT 420
||||||||||||||||||| |||| |||||| ||||||||||||||| ||||||||||||
Sbjct 626 AAGGGTTATTTTGTTCTCAGTGATGTATTTCTGTTTGTTGATGAGGGTACTGTTTACTAT 685
Query 421 CATCAGCCTTCTTATTTATCTGAAACCAAGCATGAGGCTCAGCTTAATCCTCCTACCCAT 480
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 686 CATCAGCCTTCTTATTTATCTGAAATCAAGCATGAGGCTCAGCTTAATCCTCCTACCCGT 745
Query 481 CATCCAGAACCCCAAGTTCCTGACTATGTTCTGGAGGAAGAGGCAAGAGATTATGTGAAC 540
|||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||
Sbjct 746 CATCCAGATCCCCAAGTTTCTGACTATGTGCTGGAGGAAGAGGCAAGCGATTATGTGAAC 805
Query 541 GCAGTCCAAATCAAAGATGATCTTGTCGATAAGTACAGTCTGCAAGAGGACCAACATCAA 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 806 GCAGTCCAAATCAAAGATGATCTTGTTGATAAGTACAGTCTGCAAGAGGACCAACATCAA 865
Query 601 CCTCAGCATGAAGTCTATGAAGATGAAGTTGCGATTGAGGAAACACCTAGGGAAGAAGTT 660
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 CCTCAGCATGAAGACTATGAAGATGAAGTTGCGATTGAGGAAACACCTAGGGAAGAAGTT 925
Query 661 GCAGTTGATGTGGTACATGAACATCGGGCTGCACCACTAGAGGAACCCGTTGGTGAAAAA 720
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 926 GCAGTTGATGTGGTACATGAACATCGGGCTGCACCAGTAGAGGAACCAGTTGGTGAAAAA 985
Query 721 TCAAAGATGAGTTATGCTTCCATTTTAAAGGTTGCAAAGGAAGCAGCAGCTGTACCTGTA 780
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 986 TCAAAGATGAGTTATGCTTCCATTTTAAAAGTTGCAAAGGAAGCAGCAACTGTACCTGTA 1045
Query 781 GTTGCTACACAACCATCGTATAACAAGAACTCTCAAGATATTAATGAGTGGGATCAACCA 840
| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1046 GCTGCTACACAACCATCATATAACAAGAGCTCTCAAGATATTAATGAGTGGGATCAACCA 1105
Query 841 ATGCGGACTCCTTCCCCTCAGCTGGCTGCGCCTCTTGCCCCTGTTCAGCAATCAAACGCT 900
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1106 ATGCGGACTCCTTCCCCTCAGCTGGCTGCGCCTCTTGCCCCTATTCAGCAATCAAAC--T 1163
Query 901 TCATCCACGTATGTTTCCGACTATGGAGCAGAGGCAGAAGATGGCTCTGGATTTGAAGAC 960
||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1164 -CATCCACATATGTTTCCGACTATGGAGCAGAGGCAGAAGATGGCTCCGGTTTTGAAGAC 1222
Query 961 TTTGAGTTCAAATCAGTGTACGTTAGGAATTTGCCGTCCGACATATCTGCTTCTGAAATC 1020
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1223 TTTGAGTTCAAATCAGTGTACGTTAGGAATTTGCCTTCCGACATATCTGCTTCTGAAATA 1282
Query 1021 GAGGAAGAGTTTAAGAACTTTGGTACAATCAAGCCTGATGGTGTGTTCCTCAGAACCCGC 1080
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1283 GAGGAAGAGTTTAAGAACTTCGGTACAATCAAGCCTGATGGTGTGTTCCTCAGAACCCGC 1342
Query 1081 AAGGATGTTATGGGCGTTTGTTATGCATTTGTTGAGTTTGAGGACATGACTTCCGTTGAG 1140
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 AAGGATGTTATGGGCGTATGTTATGCATTTGTTGAGTTTGAGGACATGACTTCCGTTGAG 1402
Query 1141 AATGCCATTAAGGCTTCTCCTATATACTTGGGTGGAAGGCAAGTATACATTGAGGAACGA 1200
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 AATGCGATTAAGGCTTCTCCTATATACTTGGGTGGAAGGCAAGTATACATTGAGGAACGA 1462
Query 1201 AGACCCAATCCCGCTGGTGTTCGTGGTGCAAGACGAGGAGGAGGACGTGGAAGGGGTGGC 1260
||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 1463 AGACCAAATCCCGCTGGTGTTCGCGGAGCAAGAAGAGGAGGAGGACGTGGAAGGGGTGGT 1522
Query 1261 TACCCAACAGAAGCACCAAGAGGCCGGTTTGGTGCCCGTGGGTCTGGCAGAGGAAACCAG 1320
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1523 TACCCAACAGAAGCACCAAGAGGCCGGTTTGGTGGGCGTGGGTCTGGCAGAGGAAACCAG 1582
Query 1321 GATGGAGGTGACTACAGGCCAAGAGGTAACGGTTACTACCGCGGAGGTGGTCGTTAAGGa 1380
|||||||||||||||||||||||||| || |||||||||||||| |||||||| ||| |
Sbjct 1583 GATGGAGGTGACTACAGGCCAAGAGGAAATGGTTACTACCGCGGTGGTGGTCGCTAA--A 1640
Query 1381 a-aaaaaaGAATCTCTTCA 1398
| ||||||||||||| |||
Sbjct 1641 AGAAAAAAGAATCTCGTCA 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5