BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948785

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43720.1 | Symbols:  | Protein of unknown function (DUF2361)...   505    2e-142


> AT5G43720.1 | Symbols:  | Protein of unknown function (DUF2361) 
| chr5:17557166-17559354 REVERSE LENGTH=1371
Length=1371

 Score =  505 bits (273),  Expect = 2e-142
 Identities = 301/315 (96%), Gaps = 0/315 (0%)
 Strand=Plus/Plus

Query  174  CAAGACGCTCATACCCGTCTTGCTGTTGAACGTAAAATATTCCTTAGGAACAGAAAGATT  233
            |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  330  CAAGACGCTCATGCCCGTCTTGCTGTTGAACGTAAAATATTCTTTAGGAACAGAAAGATT  389

Query  234  AAGTTCTTTGAGCGGAGAAAGATCGAAAGGAGTATTAGACGTCTTGAGAAGTTACAACGT  293
            ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  390  AAGTTCTTTGAGCGGAGAAAGATCGAAAGAAGCATTAGACGTCTTGAGAAGTTACAACGT  449

Query  294  ACTTCATCTGCTCATGTGGGCGATACAGATATAGCTGAGCAACTAAGTAAACTCAAAGAA  353
            |||||||||||||||||||| |||  |||||||||||||||||| |||||||||||||||
Sbjct  450  ACTTCATCTGCTCATGTGGGAGATGTAGATATAGCTGAGCAACTCAGTAAACTCAAAGAA  509

Query  354  GACCTTGAGTATGTTCGGTTCTTCCCGAAAAATGAGAAGTATGTATCTCTTTTTACTGGA  413
            || ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  510  GATCTTGAATATGTTCGGTTCTTCCCGAAAAATGAGAAATATGTATCACTTTTTACTGGA  569

Query  414  GCTGAGGATTCAGAAGTAATTGAGAAGAGAGGTCAAATGCGGAAGCAGATCAAAGCCAAT  473
            ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct  570  GCTGAGGATTCAGAAGTAATTGAGAAGAGAGGTAAAATGCGGCAGCAGATCAAAGCCAAT  629

Query  474  ATTATTGTTGCTGCT  488
            |||||||||||||||
Sbjct  630  ATTATTGTTGCTGCT  644


 Score =  254 bits (137),  Expect = 8e-67
 Identities = 161/173 (93%), Gaps = 0/173 (0%)
 Strand=Plus/Plus

Query  1    TTTGGCAAAATCCTTTAGTCATGGCGCACGGAGGTTATGCCAAGAGAAGAGTTTCGGAAC  60
            ||| ||||| ||||| || ||||||||||||||| |||||||||||||| | ||||||||
Sbjct  97   TTTAGCAAACTCCTTCAGCCATGGCGCACGGAGGCTATGCCAAGAGAAGGGATTCGGAAC  156

Query  61   CTAATCAGGCGGCGGGAAGTAGTCGGAGGTCGAAAGTATTGCGTGTAGAGAAGAAACCTA  120
            | || ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  157  CAAAACAGACGGCGGGAAGCAGTCGGAGGTCGAAAGTATTGCGTGTAGAGAAGAAACCTA  216

Query  121  AGACTGTCTCCATCAAGAATCAGATGCGTTCCGTTGAACGCTTTCTTCGTAAA  173
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  217  AGACTGTCTCCATCAAGAATCAGATGCGTTCTGTTGAACGCTTTCTTCGTAAA  269



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24413795442


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5