BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948802
Length=271
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43570.1 | Symbols: | Serine protease inhibitor, potato inh... 350 5e-96
> AT5G43570.1 | Symbols: | Serine protease inhibitor, potato inhibitor
I-type family protein | chr5:17506401-17507600 FORWARD
LENGTH=509
Length=509
Score = 350 bits (189), Expect = 5e-96
Identities = 248/275 (90%), Gaps = 10/275 (4%)
Strand=Plus/Plus
Query 1 AAAATAAAAAGA-GAAGAGAAATGTCGGAAGTATGCCCAGATACTGCAGGAGAAGGGATG 59
|||| ||| ||| |||||||||||||||| || |||| | ||||||||||||||||||||
Sbjct 34 AAAA-AAAGAGAGGAAGAGAAATGTCGGACGTTTGCCAAAATACTGCAGGAGAAGGGATG 92
Query 60 AAGA-CTTCATGGCCTGAATTGGTGGGGAGAAGAGGAGAAGAAG-CAAAAGAGATCATCG 117
|||| | ||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 93 AAGAGC-TCATGGCCTGAATTGGTGGGGAGAAGAGGAGAAGAAGTCAAA-GAGATCATCG 150
Query 118 ATAGAGAGAACACGAAAGTGACGGCTGAGATTATATCTGAAAATGCAGTTGTTTTGACTG 177
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 151 ATAGAGAGAACACGAAAGTGACGGCCAAGATTATATCTGAAAATGCAGTTGTTTTGGCTG 210
Query 178 TTGTGGTTTGTGATAGGGTTTATGTTCGTGTCAATGAC-AATGGCATTGTCACACGAACC 236
|||| |||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 211 TTGTAATTTGTGATAGGGTTTATGTTCGTGTCAATGACCAA-GGCATTGTCACAAGAACC 269
Query 237 CCTGT--CGTTGGTTAACTGAATTATTATAGATAT 269
||| | |||||| ||| | |||| ||||| ||||
Sbjct 270 CCTATTTCGTTGGCTAATTTAATTGTTATATATAT 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12416134003
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5