BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948806

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43540.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamil...   682    0.0  


> AT5G43540.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily 
protein | chr5:17496993-17497406 FORWARD LENGTH=414
Length=414

 Score =  682 bits (369),  Expect = 0.0
 Identities = 401/416 (96%), Gaps = 4/416 (1%)
 Strand=Plus/Plus

Query  21   ATGGAGAT-TGAGAGATCATCTTCGTCCACGTCATCAGAAACCGGAGCCGTCAGGCACCG  79
            |||||| | |||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct  1    ATGGAG-TGTGAGAGATCATCGTCGTCCACGTCATCAGAAACCGGAGCAGTCAGGCACCG  59

Query  80   TCGTACCG-CGTCGTCGTCGGTCTCCACCGTGACTAGACGAATGTACGAGTGCACTTTCT  138
            ||||| || |||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct  60   TCGTA-CGTCGTCGTCGTCAGTCTCCACCGTGACGAGACGAATGTACGAGTGCACTTTCT  118

Query  139  GCAAAAGAGGTTTTACGAACGCACAAGCTTTAGGTGGTCACATGAACATCCATCGACGTG  198
            ||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct  119  GCAAAAGAGGTTTCACAAACGCACAAGCTTTAGGTGGTCATATGAACATCCATCGACGTG  178

Query  199  ACCGTCTCAACAAGGCCAAGGTGCAAAACGATGCTGACGTGGCACTCTCACAAACTCATA  258
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  179  ACCGTCTCAACAAGGCCAAGGTGCAAAACGATGCTGACGTGGCACTCTCGCAAACTCATA  238

Query  259  GATGTTTCCACGTGGCGTCTGATCGTGGAGGCTACGAGCAAGTAGACTCCGTCGTGTTGA  318
            |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct  239  GATGTTTCCACGTGGCGTCTGACCTTGGAGGCTACGAGCAAGTAGACTCCGTCGTGTTGA  298

Query  319  GGACGACGACCTCGAACTACATCCAACACTTACGAATCGGCTCGATGGCTACAAGGAGAG  378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  299  GGACGACGACCTCGAACTACATCCAACACTTACGAATCGGCTCGATGGCTACAAGGAGAG  358

Query  379  AAAACGTCGTCGTTGAAGGAGATGAAATCGATTTGGAGCTGCGTCTTGGCTTATGA  434
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  359  AAAACGTCGTCGTTGAAGGAAATGAAATCGATTTGGAGCTGCGTCTTGGCTTATGA  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21615132070


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5