BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948807
Length=3959
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box doma... 5195 0.0
> AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain
| chr5:17489327-17494830 FORWARD LENGTH=3834
Length=3834
Score = 5195 bits (2813), Expect = 0.0
Identities = 3215/3406 (94%), Gaps = 40/3406 (1%)
Strand=Plus/Plus
Query 550 AATCT-GTTGTTGATAAAGAAGAAG-AG--ATGATAGTTGATTCTATAGAAAATTCTGTG 605
||||| || |||| ||||||||||| || ||||| ||||||||||||||| |||||||
Sbjct 448 AATCTGGTGGTTGCTAAAGAAGAAGAAGAAATGATTGTTGATTCTATAGAAGATTCTGTT 507
Query 606 GTTGAAATTGTTTCAAGTGCTTCAGGTTGTGATTGTAATGTGAAGGTAGTGGTAGTGGAA 665
|||||||||||||||| |||||| ||||||||||||||||||||||| | |||||||||
Sbjct 508 GTTGAAATTGTTTCAACTGCTTCGGGTTGTGATTGTAATGTGAAGGTTGAGGTAGTGGAC 567
Query 666 CCTGAATTGTGTGTTGAGACTCTGGTGAG-TGTTAAAGAAGAAGACATGAGTGTTGATTC 724
||||||||||||||||| | ||||||| | ||||||||||||||| |||| || ||||||
Sbjct 568 CCTGAATTGTGTGTTGATAATCTGGTG-GTTGTTAAAGAAGAAGAAATGATTGCTGATTC 626
Query 725 TATAATGGAATCTGTGGTTGAAACGGTTTCCAGAGGTTCAGACAACAAGTGTGTTGATGT 784
||| |||||||||||||||||| ||||| ||||||| ||| | |||||||||||||
Sbjct 627 GATAGCGGAATCTGTGGTTGAAACTGTTTCGAGAGGTTTAGATTATGAGTGTGTTGATGT 686
Query 785 CAAGGTCAAGGAAGAACCTGATTTAGATATAAAGTTAGAAGAAGATTCTG----T----- 835
|||||| || |||||||||||||||| || ||| || ||||||||||||| |
Sbjct 687 CAAGGTGAAAGAAGAACCTGATTTAGGTACAAAATTGGAAGAAGATTCTGTTTTTCCGAA 746
Query 836 TGTGCTCGAGAAGAAGGATGAGGTAATCAAAGTCCAGGAAGACCAGCCAAGTGAGATTAA 895
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 747 TGTGCTTGAGAAGAAGGATGAGGTAATCAAAGTCCTGGAAGACCAGCCAAGTGAGATT-A 805
Query 896 TGGATTGTTGCAAGAAAATA-AGAAAGTAGACCAAGAAATTGTTCTCTTTTCGTCTGGTG 954
| | ||||| || || ||| ||| | | | || ||||||||||||||| |
Sbjct 806 ---A----T--AAGAAGCTAGAGCAAG-AGA--ATG--A-TGATCTCTTTTCGTCTGGAG 850
Query 955 ATTCGGATGGTGCATCAGCTAAAAGAAGGAAAATAGAGATGGAATCATCTGTACCAATCG 1014
|||| |||||| ||||||| || ||||||||||| ||||||||||||| || |||| |||
Sbjct 851 ATTCAGATGGTACATCAGCCAAGAGAAGGAAAATGGAGATGGAATCATATGCACCAGTCG 910
Query 1015 GTGTCCAAAGCTGTATCCTAGCGCCGACGCCCCTTCGAGTTGTGAAACCGGAGAAGTTGG 1074
|||| ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 911 GTGTGGAAAGCTGTATCCTGGCGCCGACGCCTCTTCGAGTTGTGAAACCAGAGAAGTTGG 970
Query 1075 ATACCCCTGAAGTTATTGATCTGGAATCTGAGAAGAGTTATACTCATGTGAAGATGGAAC 1134
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 971 ATACCCCTGAAGTTATTGATCTGGAATCAGAGAAAAGTTATACTCATGTGAAGATGGAAC 1030
Query 1135 CGGTTGAGGAAATAAAGGCGGAAGCTGTGAAGATGAGTTCTCAAGTGAAAGAAT-TGAAA 1193
| |||||||||||||||| ||||||||| |||||||||||||||||| ||| || |||||
Sbjct 1031 CTGTTGAGGAAATAAAGGTGGAAGCTGTTAAGATGAGTTCTCAAGTGGAAG-ATGTGAAA 1089
Query 1194 TTTAGCCGTGAGCAGAAACCGGTATTTGTGAAGAAGGAACCGGTTGAAGCAAGAAAGGTG 1253
|||||||||||||||||| | || | ||||||||||||||| |||| |||||||||||||
Sbjct 1090 TTTAGCCGTGAGCAGAAATCTGTGTATGTGAAGAAGGAACCAGTTGGAGCAAGAAAGGTG 1149
Query 1254 AAAGTGGAAGACGGAGATTTTCCGGTGGAGAAAGATTGGTATTTGGTTGGGAGGTCACTT 1313
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 AAAGTGGAAGATGGAGATTTTCCGGTGGAGAAAGATTGGTATTTGGTTGGGAGGTCACTT 1209
Query 1314 GTCACTGCTACTTCTACAAGTAAAGGAAGGAAGTTAGAAGATAACGAGATTGTGAATTTC 1373
|| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1210 GTTACTGCTACTTCTACGAGTAAAGGAAGGAAATTAGAAGATAATGAGATTGTGAATTTC 1269
Query 1374 ACTTTTTCCTCTGTTGCCAATTGGAAAGTCCCTAACATTGTTCGTTTCTCTACCAAAAGA 1433
|| ||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1270 ACATTTTCTTCTGTTGCAAAATGGAAAGTCCCAAACATTGTTCGTTTCTCTACCAAAAGA 1329
Query 1434 TGTGGCGAGATTGGTAGACTTCCTATGGAGTGGTCTAATTGGGCTGTGAGTCTTTTAAGA 1493
||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1330 TGTGGAGAGATTGGTAGACTTCCGATGGAGTGGTCAAATTGGGCTGTGAGCCTTTTAAGA 1389
Query 1494 TCTGGTAAGGTCAAAATGTTAGGCAGATGTGTAGCGGCGCCACCGTTTCTTACAATGATG 1553
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1390 TCTGGTAAGGTCAAGATGTTAGGCAGATGTGTAGCGGCGCCACCATTTCTTACAATGATG 1449
Query 1554 CAAGAAATTATGCTATATGTCAGTTTTTACATTCACATCTCGATATTCACTGATGTTAGC 1613
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1450 CAAGAAATTATGCTATATGTCAGTTTTTACATTCACAGCTCGATATTCACTGATGTTAGC 1509
Query 1614 AAATCCACTTGGCGAATTGGTTCTTCCCCAAACATCGAGTCCACGCTTCATCCTCTTCTC 1673
|||||||||||||| |||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 1510 AAATCCACTTGGCGGATTGGTTCTTCCCCAAACCTTGAGTCCACCCTTCATCCTCTTCTC 1569
Query 1674 CAGCTTTTCAAACACTTGACAATCAAACCTTATCAAAAGGCGGAGTTTACTCCTGAGGAA 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 CAGCTTTTCAAACACTTGACAATCAAACCTTATCAAAAGGCGGAGTTTACTCCTGAGGAA 1629
Query 1734 CTTAACTCTCGTAAACGATCACTGAATTTGGAGGATGACTTTGATGAAAGAGCAGCATTG 1793
|| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1630 CTCAACTCTCGTAAACGTTCACTGAATTTGGAGGATGACTATGATGAAAGAGCAGCATTG 1689
Query 1794 TTGGCCATAGCAAAAAGAAGAAAAGGTTGTCAACAGTCTCTGGAGCAGAACAAAGATGAA 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 TTGGCCATAGCAAAAAGAAGAAAAGGTTGTCAACAGTCTCTGGAGCAGAACAAAGATGAA 1749
Query 1854 GAAGAGGCTCCTGACTCATATATGAATCGGGTTGTCGGCGCTGCAGATTCATATAACCTT 1913
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1750 GAAGAGGCTCCTGAGTCATATATGAATCGGGTTGTCGGCGCTGCCGATTCATACAACCTT 1809
Query 1914 GAGGAAATGGAAGCTCCAAGTACACTAACGTGTAACCTGAGACCGTACCAGAAACAAGCT 1973
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1810 GAGGAAATGGAAGCTCCAAGTACACTCACGTGTAACCTGAGACCGTACCAGAAACAAGCT 1869
Query 1974 CTCTACTGGATGTCAGAATCTGAGAAAGGAATTGATGTTGAAAAGGCAGCTGAAACTCTA 2033
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1870 CTCTACTGGATGTCGGAATCTGAGAAAGGAATTGATGTTGAAAAGGCAGCTGAAACTCTA 1929
Query 2034 CATCCATGTTGGGAGGCTTATCGAATCTGTGACGAGAGAGCACCTTCAATTTATTTGAAC 2093
||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1930 CATCCTTGCTGGGAGGCTTATCGAATCTGTGACGAGAGGGCACCTTCTATTTATTTGAAC 1989
Query 2094 ATCTTTAGTGGTGAAGCAACAATCCAGTTTCCAACAGCAACACAGATGGCAAGAGGCGGA 2153
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1990 ATCTTTAGTGGTGAAGCAACAATCCAGTTTCCAACAGCAACGCAGATGGCAAGAGGCGGA 2049
Query 2154 ATATTGGCAGATGCCATGGGACTTGGAAAAACTGTGATGACAATTGCACTAATACTTGCA 2213
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2050 ATATTGGCAGATGCCATGGGACTTGGTAAAACTGTGATGACAATTGCACTAATACTTGCA 2109
Query 2214 CGGCCTGGCCGAGGTAACCCAGG-AAATGAAGATGGCTTGGCGGCAGATGTTAATGCAGA 2272
||||| |||||||||||||| || ||||||||||| ||||| ||||||||||||||||||
Sbjct 2110 CGGCCAGGCCGAGGTAACCC-GGAAAATGAAGATGTCTTGGTGGCAGATGTTAATGCAGA 2168
Query 2273 TAAACGCAAGAGGAAGGAGAGTCATACCGCACTAACGATTGTGAAGGCAAAAGGAGGCAC 2332
||||||||| |||||||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct 2169 TAAACGCAATAGGAAGGAGATTCATATGGCACTAACGACTGTGAAGGCAAAAGGAGGCAC 2228
Query 2333 TCTTATTATTTGTCCCATGGCATTGTTAAGCCAATGGAAGGACGAGCTTGAGACTCATTC 2392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2229 TCTTATTATTTGTCCCATGGCATTGTTAAGCCAATGGAAGGACGAGCTTGAGACTCATTC 2288
Query 2393 AAAGCCTGACACTGTGTCTGTGTTAGTTTACTATGGAGGGGATAGGACACATGACGCGAA 2452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2289 AAAGCCTGACACTGTGTCTGTGTTAGTTTACTATGGAGGGGATAGGACACATGACGCGAA 2348
Query 2453 AGCAATAGCGAGTCATGATGTGGTTTTGACAACTTATGGTGTCTTAACCTCAGCTTACAA 2512
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2349 AGCAATAGCGAGTCATGATGTGGTTTTGACAACTTATGGTGTTTTAACCTCAGCTTACAA 2408
Query 2513 GCAGGATATGGCAAACAGTATTTTCCACAGGATTGATTGGTATAGGATTGTTCTTGATGA 2572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2409 GCAGGATATGGCAAACAGTATTTTCCACAGGATTGATTGGTATAGGATTGTTCTTGATGA 2468
Query 2573 AGCTCACACGATCAAATCGTGGAAAACTCAAGCTGCTAAAGCTACATTTGAGTTGTCCTC 2632
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct 2469 AGCTCACACGATCAAATCATGGAAAACTCAAGCTGCTAAAGCCACATTTGAGTTATCTTC 2528
Query 2633 ACATTGCAGATGGTGTCTGACTGGGACTCCCTTACAAAACAAGCTTGAAGATCTTTACAG 2692
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2529 ACATTGCAGATGGTGTCTGACTGGGACTCCCTTACAAAACAAGCTCGAAGATCTATACAG 2588
Query 2693 TCTTCTATGCTTCCTGCATGTCGAACCATGGTGCAATTGGGCTTGGTGGAGTAAGTTGAT 2752
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2589 TCTTCTATGTTTCCTGCATGTTGAACCATGGTGCAATTGGGCTTGGTGGAGTAAGTTGAT 2648
Query 2753 ACAGAAGCCTTATGAAAATGGTGATTCACGAGGACTGAAGCTGATCAAGGCGATTTTGAG 2812
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2649 ACAGAAGCCTTATGAAAATGGTGATCCACGAGGACTGAAGCTGATCAAGGCGATTTTGAG 2708
Query 2813 GCCATTGATGCTGAGAAGAACAAAGGAAACAAGGGACAAAGAAGGAAGTCTAATTCTTGA 2872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2709 GCCATTGATGCTGAGAAGAACAAAGGAAACAAGGGACAAAGAAGGAAGTCTAATTCTTGA 2768
Query 2873 ACTTCCTCCAACTGATATCCAAGTCATTGAATGTGAACAATCCGAAGCAGAACGTGACTT 2932
|||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2769 ACTTCCTCCAACCGACGTCCAAGTCATTGAATGTGAACAATCTGAAGCAGAACGTGACTT 2828
Query 2933 CTATACTGCCCTT-TTCAAGAGATCCAAAGTTCAATTTGACCAGTTTGTGGCACAAGGAA 2991
|||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2829 CTATACAGCC-TTGTTCAAGAGATCCAAAGTCCAATTTGACCAGTTTGTGGCACAAGGAA 2887
Query 2992 AAGTTCTCCACAACTATGCAAACATCCTCGAGCTCCTCCTCCGTCTACGCCAATGTTGTA 3051
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2888 AAGTTCTTCACAACTATGCAAACATCCTCGAGCTCCTCCTCCGTCTACGCCAATGTTGTA 2947
Query 3052 ACCACCCTTTTCTAGTTATGAGCCGAGCAGATTCACAACAGTACGCAGACTTAGATAGCC 3111
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2948 ACCACCCTTTTCTAGTTATGAGCCGAGCAGATTCACAACAGTACGCTGACTTAGATAGCC 3007
Query 3112 TTGCAAGGAGGTTTCTTGATAACAACCCTGACTCTGTTTCCCAAAATGCGCCTTCTCGGG 3171
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3008 TTGCAAGGAGGTTTCTTGATAACAACCCTGACTCTGTTTCCCAAAATGCTCCTTCTCGGG 3067
Query 3172 CATATATCGAGGAAGTTATCCAGGATTTACGCGATGGAAATAGCAAAGAATGTCCAATAT 3231
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 3068 CATATATCGAAGAAGTTATCCAAGATTTACGCGATGGCAATAGCAAAGAATGTCCAATAT 3127
Query 3232 GTCTGGAGTCTGCAGATGATCCCATTCTCACACCTTGTGCTCACAGAATGTGCCGGGAAT 3291
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 3128 GTCTGGAGTCTGCAGATGATCCCGTTCTCACACCTTGTGCTCACAGAATGTGCCGTGAAT 3187
Query 3292 GTCTCCTTACTAGCTGGCGGTCCCCATCTTGTGGTCTTTGCCCAATCTGCAGGACAATCC 3351
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 3188 GTCTCCTTACTAGCTGGCGCTCTCCATCTTGTGGTCTATGCCCAATCTGCAGGACAATCC 3247
Query 3352 TGAAGAGAACTGAGCTGATCTCATGCCCGACAGATAGTATATTCCGTGTTGATGTGGTAA 3411
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3248 TGAAGAGAACCGAACTTATCTCATGCCCGACAGATAGTATATTCCGTGTTGATGTGGTAA 3307
Query 3412 AGAACTGGAAGGAGTCTTCAAAGGTTTCAGAGCTGCTCAAGTGCTTAGAGAAGATCCAA- 3470
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 3308 AGAACTGGAAGGAGTCTTCAAAGGTTTCGGAGCTGCTCAAGTGCTTAGAGAAGATC-AAG 3366
Query 3471 AAATCTGGTTCAGGTGAGAAGAGCATTGTCTTTAGCCAGTGGACTTCATTTTTGGATCTT 3530
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3367 AAATCTGGTTCGGGCGAGAAGAGCATTGTCTTTAGCCAGTGGACTTCATTTTTGGATCTT 3426
Query 3531 TTGGAGATTCCATTGCGAAGAAGAGGATTCGAGTTTCTTAGATTCGATGGGAAGCTGGCT 3590
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3427 TTGGAGATTCCATTGCGAAGAAGAGGATTTGAGTTTCTTAGATTCGATGGGAAGCTGGCT 3486
Query 3591 CAAAAAGGAAGAGAAAAGGTTTTGAAAGAGTTCAATGAAACCAAACAGAAAACGATTCTG 3650
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3487 CAGAAGGGAAGAGAAAAGGTTTTGAAAGAGTTCAATGAAACCAAACAGAAAACGATTCTG 3546
Query 3651 CTTATGTCTCTGAAAGCTGGAGGAGTTGGTCTGAATCTAACTGCAGCTTCAAGTGTCTTC 3710
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3547 CTTATGTCTCTGAAAGCTGGAGGAGTCGGTCTGAATCTAACTGCAGCTTCAAGTGTCTTC 3606
Query 3711 TTAATGGATCCATGGTGGAATCCGGCGGTAGAAGAGCAAGCGATCATGAGAATTCATCGA 3770
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 3607 TTAATGGATCCATGGTGGAATCCAGCGGTGGAAGAGCAAGCGATCATGAGAATTCATCGA 3666
Query 3771 ATAGGGCAGAAACGAACAGTATTTGTCAGAAGATTCATTGTCAAGGATACAGTGGAGGAA 3830
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3667 ATAGGGCAGAAACGAACGGTATTCGTCAGAAGATTCATTGTCAAGGATACAGTGGAGGAA 3726
Query 3831 CGGATGCAGCAAGTTCAGGCAAGGAAGCAGAGGATGATTGCCGGAGCTTTGACCGATGAA 3890
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3727 CGGATGCAGCAAGTTCAGGCAAGGAAGCAGAGGATGATTGCCGGAGCTTTGACAGATGAA 3786
Query 3891 GAAGTCCGGTCGGCAAGACTTGAGGAGCTCAAAATGTTGTTCCGAT 3936
||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 3787 GAAGTCCGGTCTGCAAGACTTGAGGAGCTTAAAATGTTGTTCCGAT 3832
Score = 520 bits (281), Expect = 6e-146
Identities = 467/549 (85%), Gaps = 44/549 (8%)
Strand=Plus/Plus
Query 21 ATGGCCATCGTTGATGACTCTGAGAAGCTGATAACTGAATCCGAAGCTGTTTCGAGTTCC 80
|||||||| ||||||||| | |||| || | |||| ||||||||||||||||||||||||
Sbjct 1 ATGGCCATTGTTGATGACGCAGAGATGCGGTTAACCGAATCCGAAGCTGTTTCGAGTTCC 60
Query 81 GTTGATGGTAAGATCGTTGCAGATACTCCCGACTTTATTGACGAATCCTCTCTAGTCGTC 140
| |||| ||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 61 GATGATCGTAAGATCGTTGCAGATACTCCCGATTTTATAGACGAATCCTCTCTAGTCATC 120
Query 141 AGAACAACCACTGGAGTCCGAATCTCACCTCATTTC-GTAGAGCAAAGCCTTGTTGACTC 199
||||||||||||||||||||||||||| ||| | | | ||||||||||||||||||||
Sbjct 121 AGAACAACCACTGGAGTCCGAATCTCAGCTC-TACCGGCGGAGCAAAGCCTTGTTGACTC 179
Query 200 CGATGGATCTAAGTCGGATTTTTCGGGCGTTGTTGCCCCTGCGGTTACGCTTCCGGCGAA 259
|||||||||||| ||||| || || | || || | | ||||||
Sbjct 180 CGATGGATCTAACTCGGA------GG---TTA---C----GC--TT-C-C----GGCGAA 215
Query 260 AGACGAGGTAATTAGTGATGGTTTTGCTTCTGTGAATAAAGAGATTGTAGAATCTGATTC 319
||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||
Sbjct 216 AGACGAGGTAATTAGTGATGGTTTTACTTGTGTGAACAAAGAGATTGTAGAATCTGATTC 275
Query 320 ATTTAGGGCGGATAGTTTAGAGACTCGTGTTAAGGAGGAACCTGATTTGGATGTTGAGAA 379
|||||||| | | | | |||||| | || | || |||||||||| |||||||||||
Sbjct 276 ATTTAGGGAGCAGAATCTAGAGA-T--TG----G-AG-AACCTGATTTAGATGTTGAGAA 326
Query 380 TCGCGAAGAAGCGATGATTATTGATTCGATAGGAAATTCTGTGGTTGAAACTCTTCCAAG 439
|||| ||||||||||||||||||||||||||| ||||||||||||||||| | || ||||
Sbjct 327 TCGCAAAGAAGCGATGATTATTGATTCGATAGAAAATTCTGTGGTTGAAATTGTTTCAAG 386
Query 440 TGCTTCGGGTGATGATTGTAATGTTCAGGTAGAGGTAGTGGAACCTGAATTGCTTGTTGA 499
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 387 TGCTTCTGGTGATGATTGTAATGTTAAGGTAGAGGTAGTGGAACCTGAATTGCTTGTTGA 446
Query 500 GAATCTGGTGGTTGTTAAAGAAGACGAAG---TG-TTCGTTGATTCGATAGCGAA-AT-C 553
|||||||||||||| ||||||||| |||| || || |||||||| |||| || || |
Sbjct 447 GAATCTGGTGGTTGCTAAAGAAGAAGAAGAAATGATT-GTTGATTCTATAG--AAGATTC 503
Query 554 TGTTGTTGA 562
|||||||||
Sbjct 504 TGTTGTTGA 512
Score = 198 bits (107), Expect = 3e-49
Identities = 168/195 (86%), Gaps = 13/195 (7%)
Strand=Plus/Plus
Query 568 AAGAAGAGATGA-TAGTTGATTCTATAGAAAATTCTGTGGTTGAAATTGTTTCAAGTGCT 626
|||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 332 AAGAAGCGATGATTA-TTGATTCGATAGAAAATTCTGTGGTTGAAATTGTTTCAAGTGCT 390
Query 627 TCAGGTTG-TGATTGTAATGTGAAGGTAGTGGTAGTGGAACCTGAATTG-TGTGTTGAGA 684
|| ||| | |||||||||||| ||||||| ||||||||||||||||||| | ||||||||
Sbjct 391 TCTGGT-GATGATTGTAATGTTAAGGTAGAGGTAGTGGAACCTGAATTGCT-TGTTGAGA 448
Query 685 CTCTGGTGAGT-GTTAAAGAAGAAGAC-A--TGAGTGTTGATTCTATA-ATGGAATCTGT 739
||||||| || | |||||||||||| | ||| ||||||||||||| | | | |||||
Sbjct 449 ATCTGGTG-GTTGCTAAAGAAGAAGAAGAAATGATTGTTGATTCTATAGAAG-ATTCTGT 506
Query 740 GGTTGAAACGGTTTC 754
||||||| |||||
Sbjct 507 TGTTGAAATTGTTTC 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 197256419876
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5