BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948820

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43410.1 | Symbols:  | Integrase-type DNA-binding superfamil...   568    2e-161


> AT5G43410.1 | Symbols:  | Integrase-type DNA-binding superfamily 
protein | chr5:17435010-17435405 REVERSE LENGTH=396
Length=396

 Score =  568 bits (307),  Expect = 2e-161
 Identities = 370/400 (93%), Gaps = 5/400 (1%)
 Strand=Plus/Plus

Query  25   ATGGATCAAGGAGGTCGTGGTGGCGGAGCCGAGCATGGAAAGTACCGGGGAGTTCGGAGA  84
            ||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATCAAGGAGGTCGAGGTGTCGGTGCCGAGCATGGAAAGTACCGGGGAGTTCGGAGA  60

Query  85   CGGCCTTGGGGAAAATATGCAGCGGAGATACGAGATTCGAGGAAGCACGGTGAACGTGTG  144
            || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   CGACCTTGGGGAAAATATGCAGCAGAGATACGAGATTCGAGGAAGCACGGTGAACGTGTG  120

Query  145  TGGCTTGGAACGTTCGATACAGCGGAAGAAGCGGCTAGAGCCTATGACCAAGCAGCCTAC  204
            |||||||||||||||||||| || || |||||||||||||||||||||||||| || |||
Sbjct  121  TGGCTTGGAACGTTCGATACGGCAGAGGAAGCGGCTAGAGCCTATGACCAAGCTGCTTAC  180

Query  205  TCCATGAGAGGCC-AGTCCGCAATTCTAAACTTCCCTCATGAGTATAACATGGGGAGTAC  263
            ||||||||||||| || | ||||| || |||||||||||||||||||||||||||||   
Sbjct  181  TCCATGAGAGGCCAAG-CAGCAATCCTTAACTTCCCTCATGAGTATAACATGGGGAG---  236

Query  264  TGGCGGCTCTTCTTCCACCGCTATGGCTGGATCCTCCTCCTCCTCTGCCTCCGCTTCTTC  323
            ||| | ||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||
Sbjct  237  TGGTGTCTCTTCTTCCACCGCCATGGCTGGATCTTCCTCCGCCTCCGCCTCCGCTTCTTC  296

Query  324  TTCTTCTAGGGAAGTTTTTGAATTTGAGTATTTGGATGATAGTGTTTTGGAGGAGCTCCT  383
            |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  297  TTCTTCTAGGCAAGTTTTTGAATTTGAGTACTTGGATGATAGTGTTTTGGAGGAGCTCCT  356

Query  384  TGAGGAAGAAGAGAAGCCTAAGAAGGGCAAGAAGAAGTGA  423
            |||||||| |||||| ||||| |||||||||||||| |||
Sbjct  357  TGAGGAAGGAGAGAAACCTAACAAGGGCAAGAAGAAATGA  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21062186831


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5