BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948824

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08110.1 | Symbols:  | transposable element gene | chr4:5083...   213    2e-54
  AT1G48700.1 | Symbols:  | 2-oxoglutarate (2OG) and Fe(II)-depen...   182    4e-45
  AT1G36078.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   137    1e-31


> AT4G08110.1 | Symbols:  | transposable element gene | chr4:5083926-5086640 
REVERSE LENGTH=2715
Length=2715

 Score =  213 bits (115),  Expect = 2e-54
 Identities = 166/189 (88%), Gaps = 9/189 (5%)
 Strand=Plus/Plus

Query  322   AGAGAATGCTCGACGTGATGCGGAGCAACAAGC-ATCTCAAACTCGGATTGCAAACTTGG  380
             ||| ||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||||
Sbjct  2221  AGAAAATGCTCGACGTGATGCAGAGCAACAA-CAATCTCAAACTCGGATCGCAAACTTGG  2279

Query  381   AGA-GACTTGTTAT-GTATTGGAAAGAGAGTGATCCTGCCTTTGCAGCTTTTGTTGCATC  438
             ||| | |||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct  2280  AGATG-CTTG-TATCGTATTGGAAACAGAGTGATCCTGCGTTTGCAGCTTTTGTTGCATC  2337

Query  439   TCAGCCACAACCAACTGCACCAGCCAACACACAAGCCGCCAATGCAACAGCCACCAATGC  498
             ||||||||| |||||||||||||||| ||||| |||| |||   || ||||| | | |||
Sbjct  2338  TCAGCCACATCCAACTGCACCAGCCACCACACCAGCCACCA---CACCAGCCGCTAGTGC  2394

Query  499   AACAGCCAC  507
             |||| ||||
Sbjct  2395  AACAACCAC  2403


> AT1G48700.1 | Symbols:  | 2-oxoglutarate (2OG) and Fe(II)-dependent 
oxygenase superfamily protein | chr1:18011035-18012871 
REVERSE LENGTH=1174
Length=1174

 Score =  182 bits (98),  Expect = 4e-45
 Identities = 129/144 (90%), Gaps = 1/144 (1%)
 Strand=Plus/Plus

Query  186  GGGATTCTAACGCAGACTTTCATGTGGAAGATTCAAAAATAACATTGAATGTTTGTTTGA  245
            ||||| || ||| || ||||||||||||||||||| | ||||||||||||||||||||||
Sbjct  506  GGGATGCTGACGTAGGCTTTCATGTGGAAGATTCAGACATAACATTGAATGTTTGTTTGA  565

Query  246  GTAAACAAGGAGAGGGAGGGGAAATATTTTTTGCAGGCACACAATGCAAGAAACATATGG  305
            |||||||||| |||||||| |||||| |||| |||||| ||| |||||| ||||||||||
Sbjct  566  GTAAACAAGGTGAGGGAGGAGAAATACTTTTCGCAGGCGCACGATGCAATAAACATATGG  625

Query  306  ATACAGATCCAAAGCCAGAG-AAT  328
            ||| |||||||||||||||| |||
Sbjct  626  ATATAGATCCAAAGCCAGAGGAAT  649


> AT1G36078.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 0 Blast hits 
to 0 proteins in 0 species (source: NCBI BLink). | chr1:13481665-13482785 
REVERSE LENGTH=454
Length=454

 Score =  137 bits (74),  Expect = 1e-31
 Identities = 96/106 (91%), Gaps = 4/106 (4%)
 Strand=Plus/Plus

Query  71   TTCGATCGAACCTACATGCCTCTCTTGCTTATGAAACTCGAATTGAAGATTCGTTCTCTT  130
            ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct  50   TTCGATCGAGCCTACATGCCTCTCTTGCTTATGAAACTCGAATTGAAGATT-GTTCTCAT  108

Query  131  TGTGGTCTCAACAAGCCTAAGTGTATTGAATGCGGCAACGTCGCTC  176
             | | ||||||||||||||||| |||| |||||| |||| ||||||
Sbjct  109  -G-G-TCTCAACAAGCCTAAGTCTATTCAATGCGACAACATCGCTC  151



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28784166231


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5