BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948829

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17790.1 | Symbols: VPS35A, ZIP3 | VPS35 homolog A | chr2:77...  73.1    8e-13


> AT2G17790.1 | Symbols: VPS35A, ZIP3 | VPS35 homolog A | chr2:7733635-7739673 
FORWARD LENGTH=2743
Length=2743

 Score = 73.1 bits (39),  Expect = 8e-13
 Identities = 45/48 (94%), Gaps = 0/48 (0%)
 Strand=Plus/Plus

Query  7    AGACAGAGCAGAAGATGAAGAGAAATGGCTCGCCGCCAGTGCTGCTGC  54
            |||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct  59   AGACGGATCAGAAGATGAAGAGAAATGGCTCGCCGCCGGTGCTGCTGC  106



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8400325617


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5