BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948842
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43300.1 | Symbols: | PLC-like phosphodiesterases superfami... 1738 0.0
> AT5G43300.1 | Symbols: | PLC-like phosphodiesterases superfamily
protein | chr5:17376734-17379277 REVERSE LENGTH=1532
Length=1532
Score = 1738 bits (941), Expect = 0.0
Identities = 1094/1168 (94%), Gaps = 9/1168 (1%)
Strand=Plus/Plus
Query 1 TCTTTGTTCTGCAAGAAACTAAACCATGGCTCTTGAAGCTATGACATTGTCTTTATCCAA 60
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 184 TCTTTGTTC-GCAAGAAACTAAACCATGGCTCTTGAAACTATGACATTGTCTTTATCTAG 242
Query 61 TTCTGCCATGTTTTCATCAGGTGTTGTTGAAGATGATAAGAAGCAAGAAGCAT-TTGTTT 119
|||||||||||| ||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 243 TTCTGCCATGTTATCATCAGGTGTTGTTGAAGATGATAAGAAGCAAGAGGC-TATTGTTT 301
Query 120 TCCCCAAATTTGTTGTGATGGGTCATAGAGGTTTTGGGATGAACATGCTTCAATCTCCGG 179
|||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 302 TCCCTAAATTTGTTTTGATGGGTCATAGAGGATTTGGGATGAACATGCTTCAATCTCCGG 361
Query 180 ACGAGAAAATGAAATTTATCAAAGAAAATTCTATTCTTTCTTTCAGTGTTGCTGCAGATT 239
|||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct 362 ACGAGAAAATGAAATTTATCAAAGAAAATTCTCTTCTTTCTTTTAATGTTGCTGCAGATT 421
Query 240 TCCCTATTGACTTCATTGAGTTCGATGTCCAGGTAACAAGAGATGGTTGCCCTGTTATTT 299
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 422 TTCCTATTGACTTCATTGAGTTTGATGTCCAGGTAACTAGAGATGGTTGCCCTGTAATTT 481
Query 300 TCCATGATATCTTCATGTTCACGCAAGAACAGGGAGTGATTATTGAGAAAAGAGTAACAG 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 482 TCCATGATATCTTCATGTTCACGCAAGAACAGGGAGTGATTATTGAGAAAAGAGTAACGG 541
Query 360 AAATGGCTTTACATGAATTTCTCTCATATGGACCACAAAAGGATGGAACAAATGTAAAGC 419
|||||| |||||||||||||||||||||||||||||||| |||||| |||||||| ||||
Sbjct 542 AAATGGATTTACATGAATTTCTCTCATATGGACCACAAAGGGATGGTACAAATGTGAAGC 601
Query 420 CTATGTTGAGAAAGACAAAAGATGGTAGAGTTTTCGAATGGACAGTCGAAAAGGATGCTC 479
|||||| ||| |||||||||||||||||| ||||||| |||| |||||||||||||| ||
Sbjct 602 CTATGTGGAGGAAGACAAAAGATGGTAGAATTTTCGAGTGGAAAGTCGAAAAGGATGATC 661
Query 480 CTTTGTGTACCCTTGAAGAAGCTTTCGTAAAAGTTAAACACTCACTCGGATTCAATATCG 539
||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||
Sbjct 662 CTTTGTGTACCCTTGAAGATGCTTTCCTAAATGTTAAACACTCACTCGGATTCAATATCG 721
Query 540 AGCTCAAATTCGATGATAATACCGTTTATGGAGAAGAAGAGTTACGTCAAACTCTTGACA 599
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 722 AGCTCAAATTCGATGATAATACCGTATATGGAGAAGGAGAGTTACGTCAAACTCTTGACA 781
Query 600 ACATCTTGAAGGTTGTAGATGAGCATGCCAAGAACCGGCCCATTATCTTCTCGAGCTTTC 659
||||||||| ||||||| |||| ||| ||||||||||||| ||||| |||||||||||||
Sbjct 782 ACATCTTGACGGTTGTAAATGAACATTCCAAGAACCGGCCTATTATATTCTCGAGCTTTC 841
Query 660 ATCCTCATGCGGTTCGACTCATTAGAAATATGCAAAGGAATTATCCTGTATTCTTCTTAA 719
||||| | |||| ||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 842 ATCCTGACGCGGCTCGACTCATCAGGAATATGCAAAGGTGTTATCCTGTATTCTTCTTAA 901
Query 720 CAAATGGTGGATGTGAAATTTATAAGGATGTCAGAAGGAACTCATTAGACGAGGCCATAA 779
||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 902 CAAATGGAGGATGTGAAATCTATAAGGATGTGAGAAGGAACTCATTAGACGAGGCCATCA 961
Query 780 AGCTTTGCAAAGAAAGCGGTTTGCAAGGGATTGTATCTGAGGTTAAGGCCATATTAAGAA 839
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 962 AGCTTTGCAAAGAAAGCGGTTTGCAAGGGCTTGTCTCTGAGGTTAAGGCCATATTAAGAA 1021
Query 840 CACCAAACGCAATCACACGAGTCAAAGATTCAAAACTTTCACTTCTATCTTATGGCCAGC 899
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 CCCCAAACGCAATCACACGAGTCAAAGATTCAAAACTTTCACTTCTATCTTATGGCCAGC 1081
Query 900 TTAACAATGTGGTGGAGGTGATTTACTTACAATATCTGATGGGTGTGGAGGGAGTGATTG 959
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1082 TTAACAATGTGGTAGAGGTGATTTACTTGCAATATCTGATGGGTGTGGAGGGAGTGATTG 1141
Query 960 TTGATATGGTCAAGGACATCTCTGAAGCCATCGCGAATATCGAAGTTACAAACAAGGACG 1019
|||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| |
Sbjct 1142 TTGATATGGTCAAGGACATCTCCGAAGCCATTGCGAATATCGAAGTTACAAACGAGGATG 1201
Query 1020 ATTGCGAAGATGACGATGGAAA-AAAGTGTCTGATTAGGTTTGGAGAGGAGAGGAAAAA- 1077
|||| |||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1202 ATTGTGAAGGTGAGGATG-AAAGAAAGTGTCTGATTAGGTTTGGAGAGGAGAGGAAAAAA 1260
Query 1078 GCTGGAAATTTCTAAGGATGA-GATCACTTTGTTAACTAAGTTCGTACCAAAACTGCTTC 1136
| |||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 1261 G-TGGAAATTACTAAGGAT-ATGATCACTTTGTTAAATAAGTTCGTACCAAAACTGCTTT 1318
Query 1137 AACAATGAAGATTTTGCTTCATTAACAC 1164
|||||||||||||| |||||||| ||||
Sbjct 1319 AACAATGAAGATTTCGCTTCATTTACAC 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57178420755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5