BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948849

Length=305
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G62910.1 | Symbols:  | RING/U-box superfamily protein | chr5...  75.0    4e-13
  AT1G63260.1 | Symbols: TET10 | tetraspanin10 | chr1:23466800-23...  58.4    4e-08


> AT5G62910.1 | Symbols:  | RING/U-box superfamily protein | chr5:25250256-25252236 
FORWARD LENGTH=1543
Length=1543

 Score = 75.0 bits (40),  Expect = 4e-13
 Identities = 40/40 (100%), Gaps = 0/40 (0%)
 Strand=Plus/Plus

Query  17   TAAGATGAAGCAGAACAAGCTTGGTCTCCGTCGTGAGCAA  56
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  422  TAAGATGAAGCAGAACAAGCTTGGTCTCCGTCGTGAGCAA  461


> AT1G63260.1 | Symbols: TET10 | tetraspanin10 | chr1:23466800-23469204 
REVERSE LENGTH=1419
Length=1419

 Score = 58.4 bits (31),  Expect = 4e-08
 Identities = 31/31 (100%), Gaps = 0/31 (0%)
 Strand=Plus/Plus

Query  148  TTATAGCTCTTGGTGGTTTCATCTTCTTGAT  178
            |||||||||||||||||||||||||||||||
Sbjct  396  TTATAGCTCTTGGTGGTTTCATCTTCTTGAT  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14125237469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5