BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948856

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43250.1 | Symbols: NF-YC13 | nuclear factor Y, subunit C13 ...   573    4e-163


> AT5G43250.1 | Symbols: NF-YC13 | nuclear factor Y, subunit C13 
| chr5:17356174-17356566 REVERSE LENGTH=393
Length=393

 Score =  573 bits (310),  Expect = 4e-163
 Identities = 370/398 (93%), Gaps = 7/398 (2%)
 Strand=Plus/Plus

Query  21   ATGGCGGAAGAAGAAACATCAACT-CGACCAGAGTTTCCTCTCGGAAGAGTAAAGAAGAT  79
            |||| ||||||||||  ||||| | ||||||||||||||  |||||||||||||||||||
Sbjct  1    ATGGAGGAAGAAGAAGGATCAA-TCCGACCAGAGTTTCCAATCGGAAGAGTAAAGAAGAT  59

Query  80   AATGAAACTCGACAAAGACATCAACAAAATCAACTCAGAAGCTCTTCACGTCATCACTTA  139
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   AATGAAACTGGACAAAGACATCAACAAAATCAACTCAGAAGCTCTTCACGTCATCACTTA  119

Query  140  CTCCACCGAACTCTTCCTCCACTTCCTCGCCGAGAAATCAGCTATTGTTACGGCGGAGAA  199
            ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct  120  CTCCACCGAACTCTTCCTCCACTTCCTCGCCGAGAAATCTGCTGTTGTTACGGCGGAGAA  179

Query  200  GAAGCGTAAAACTGTTAATCTCGATCATTTAAGAACCGCCGTGAAAAGACACCAACCCAC  259
            ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct  180  GAAGCGTAAGACTGTTAATCTCGATCATTTAAGAATCGCCGTGAAAAGACACCAACCTAC  239

Query  260  GAGTGATTTCCTCTTAGACTCGCTTCCGTTACCGGCTCAGCCACTCAAACATACCAAATC  319
             ||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||
Sbjct  240  TAGTGATTTCCTCTTAGACTCGCTTCCGTTGCCGGCTCAGCCTGTCAAACATACCAAATC  299

Query  320  AGTTTCCGACAAGAAGGCTCCTCCGCCGCCAATTGGGACTCGTCGTATCGATGATTTCTT  379
             |||||||||||||||  |||  |||||||||||||||||||||||||||||||||||||
Sbjct  300  GGTTTCCGACAAGAAGATTCCGGCGCCGCCAATTGGGACTCGTCGTATCGATGATTTCTT  359

Query  380  TAGTAAAGGGAAAG-AGAAGACTGATGATTCAGCCTAA  416
             ||||||||||||| | |||||||||  | ||||||||
Sbjct  360  CAGTAAAGGGAAAGCA-AAGACTGAT--T-CAGCCTAA  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20810848086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5