BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948871
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43200.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 726 0.0
AT3G28620.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 717 0.0
AT2G24480.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 599 1e-170
AT4G14149.1 | Symbols: | Pseudogene of AT2G24480; zinc finger ... 274 8e-73
> AT5G43200.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)
family protein | chr5:17346141-17346764 REVERSE LENGTH=624
Length=624
Score = 726 bits (393), Expect = 0.0
Identities = 555/630 (88%), Gaps = 24/630 (4%)
Strand=Plus/Plus
Query 21 ATGGAAACTGAAGCAATCAAACTCGATGTTCATGTAAAGGCTTTCTCTCAAGCTCGGTCG 80
|||||||||||| | |||||||||||||||||||||| ||||| |||||| ||| ||||
Sbjct 1 ATGGAAACTGAATCTTTCAAACTCGATGTTCATGTAAAAGCTTTGTCTCAACCTCCGTCG 60
Query 81 TTAGGGTTCTTCAGTACGGTAGTAATCAGTCTAGT-CAGAGAAGTCGAGGAATTTATCAT 139
||||||||||| ||||||||||||||||||| | | ||||||||| ||||||||| ||||
Sbjct 61 TTAGGGTTCTTAAGTACGGTAGTAATCAGTC-AATACAGAGAAGTAGAGGAATTTCTCAT 119
Query 140 TAACGACAAGGATGATAGTGTCACGAGTCTCAGATCTTACCC-G--GATTCTTAT-C-T- 193
|||| |||||||| || |||||||||||||| |||||||||| | ||||||| | | |
Sbjct 120 TAACAACAAGGATAATTGTGTCACGAGTCTCGGATCTTACCCGGATGATTCTTCTACTTG 179
Query 194 CCACGACCCACTAATCTCTCTGAAACTCCCAAGTTTCAAACCAAACTACGTCTATCAACT 253
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 180 TCACGACCCACTAATCTCTCTGACACTCCCAAGTTTCAAACCAAACGACGTCTATCAACA 239
Query 254 TCTCCATACCCAACTCCACGATCATGTCATGTCCGAACAAATATCTTATAAGATTGTCGA 313
|||||| ||||||||||||||||||| | ||||||| |||||||||| ||||||||||||
Sbjct 240 TCTCCAGACCCAACTCCACGATCATGACTTGTCCGAGCAAATATCTTGTAAGATTGTCGA 299
Query 314 AGCCCAACAACGGCAAAGAAGTCAAAGTTTTTACTTTCCACAACAACAACCTTTATTCAT 373
||||||||||||||||| |||||||||| ||||||| |||||||||| ||||||||||||
Sbjct 300 AGCCCAACAACGGCAAACAAGTCAAAGTGTTTACTTGCCACAACAACCACCTTTATTCAT 359
Query 374 GATAGTCTCTGTCAAATTGACACACAAAGTATACAACGTTGTG--TC--TTGT-AATTCT 428
|| ||||||||||||||||||||||| || ||| ||||||| || ||| || |
Sbjct 360 AATCGTCTCTGTCAAATTGACACACAAGGTTTACGTCGTTGTGCCTCCGTTGGCAA--CA 417
Query 429 GCTTTGGACCAAGAGA-G--CCaagaagaagaagaagaaTCCAAGACTTGTGCTATCTGT 485
| |||||||||||||| | ||||| ||||||||||||||| ||||||||||| ||||||
Sbjct 418 GATTTGGACCAAGAGATGAGCCAAGGAGAAGAAGAAGAATCGAAGACTTGTGCCATCTGT 477
Query 486 TTGGAG-AATTTGTCGAGATCCGAGGATTACTGCGAGATGCCTA-CTTGTTCGCATAGTT 543
|||||| |||| ||||| |||||| |||||||||||| |||||| || | | ||| |||
Sbjct 478 TTGGAGGAATT-GTCGACATCCGATGATTACTGCGAGTTGCCTAACT-GCACTCATTGTT 535
Query 544 TTCATGAACCATGTCTCACTCAGTGGTTGACTC-GAGATAATAACTCGTGCCCTCTCTGT 602
|||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||
Sbjct 536 TTCATGAACCATGTCTCACTCAGTGGTTGA-TCCGAGGTAATAACTCATGCCCTCTCTGT 594
Query 603 CGCAAACCTGTTGACAAACAACCAGAGTGA 632
|||||||||||||||||||||||| |||||
Sbjct 595 CGCAAACCTGTTGACAAACAACCACAGTGA 624
> AT3G28620.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)
family protein | chr3:10727826-10728461 FORWARD LENGTH=636
Length=636
Score = 717 bits (388), Expect = 0.0
Identities = 558/635 (88%), Gaps = 31/635 (5%)
Strand=Plus/Plus
Query 21 ATGGAAACTGAAGCAATCAAACTCGATGTTCATGTA-AAGGCTTTCTCTCAAGCTCGGTC 79
|||||||| ||| | |||||||||||||||||||| || ||||| ||||||| || |||
Sbjct 1 ATGGAAACAGAATCTTTCAAACTCGATGTTCATGTACAA-GCTTTGTCTCAAGATCAGTC 59
Query 80 GTTAGGGTTCTTCAGTACGGTAGTAATCAGTCTAGT-CAGAGAAGTCGAGGAATTTATCA 138
|||||||||| | ||||||||| ||||||||| | | ||||||||| ||||||||| |||
Sbjct 60 GTTAGGGTTCGTAAGTACGGTACTAATCAGTC-AATACAGAGAAGTAGAGGAATTTCTCA 118
Query 139 TTAACGACAAGGATGATAGTGTCACGAGTCTCAGATCTTACCC---GGATTCTTAT-CT- 193
| ||||| |||||||||| |||||| |||||| |||||||||| |||||||| | ||
Sbjct 119 TCAACGAGAAGGATGATACTGTCACAAGTCTCGGATCTTACCCGGAGGATTCTTCTACTA 178
Query 194 -CCACGACCCACTAATCTCTCTGAAACTCCCAAGTTTCAAACCAAACTACGTCTATCAAC 252
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 179 GTCACGACCCACTAATCTCTCTGAAACTCCCAAGTTTCAAACCAAACGACGTCTATCAAC 238
Query 253 TTCTCCATACCCAACTCCACGATCATGTCATGTCCGAACAAATATCTTATAAGATTGTCG 312
|||||| ||||| ||||||||||||| | ||||||||||| ||||||| |||||||||
Sbjct 239 GTCTCCAGACCCATCTCCACGATCATGACTTGTCCGAACAATTATCTTACAAGATTGTCC 298
Query 313 AAGCCCAACAACGGCAAAGAAGTCAAAGTTTTTACTTTCCACAACAACAACCTTTATTCA 372
|||||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||
Sbjct 299 AAGCCCAACAACGGCAAAAAAGACAAAGTTTTTACTTGCCACAACAACGACCTTTATTCA 358
Query 373 TGATAGTCTCTGTCAAATTGACACACAAAGTATACAACGTTGTGTCTTGTAATTCTGCT- 431
|||| ||||||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 359 TGATCGTCTCTGTCAAATTGACACACAAGGTTTACAACGTTGTGTCTTGTGATTCTGCTC 418
Query 432 --TTGG-A-C------C-A--A-GAGAGCCaagaagaagaagaaga--a-TCCAAGACTT 474
|||| | | | | | ||||||||| ||||||||||||| | || |||||||
Sbjct 419 CGTTGGCAACAGATTTCGACCAAGAGAGCCAACAAGAAGAAGAAGAGGAATCGAAGACTT 478
Query 475 GTGCTATCTGTTTGGAGAATTTGTCGAGATCCGAGGATTACTGCGAGATGCCTACTTGTT 534
|||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 479 GTGCCATCTGTTTGGAGAATTTGTTGAGATCGGAGGATTACTGCGAGATGCCTACTTGTT 538
Query 535 CGCAT-AGTTTTCATGAACCATGTCTCACTCAGTGGTTGACTCGAGATAATAACTCGTGC 593
| ||| | |||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 539 CCCATTA-TTTTCATGAACCATGTCTCACTGAGTGGTTGACTCGAGATAATAACTCATGC 597
Query 594 CCTCTCTGTCGCAAACCTGTTGACAAACAAC-CAG 627
|||||||||||||||||||||||||||| || |||
Sbjct 598 CCTCTCTGTCGCAAACCTGTTGACAAACTACACAG 632
> AT2G24480.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)
family protein | chr2:10397588-10398184 FORWARD LENGTH=597
Length=597
Score = 599 bits (324), Expect = 1e-170
Identities = 516/607 (85%), Gaps = 20/607 (3%)
Strand=Plus/Plus
Query 21 ATGGAAACTGAAGCAATCAAACTCGATGTTCATGTAAAGGCTTTCTCTCAAGCTCGGTCG 80
||||| |||||| || ||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 1 ATGGATACTGAATCATTCAAACTCGATGTTCATGTTCAGGCTTGGTCTCAAGGTCGGTCA 60
Query 81 TTAGGGTTCTTCAGTACGGTAGTAATCAGTCTA-GTCAGAGAAGTCGAGGAATTTATCAT 139
||||||||||| || || ||||||||||||||| | |||||||||||||||||| ||||
Sbjct 61 TTAGGGTTCTTAAGCACCGTAGTAATCAGTCTACAT-AGAGAAGTCGAGGAATTTCTCAT 119
Query 140 TAACGACAAGGATGATAGTGTCACGAGTCTCAGATCTTACCCGGATTCTTATCT-CCACG 198
||| || || ||||||||||||||||||||| | |||||||| ||||||| | | |||||
Sbjct 120 TAAAGAGAAAGATGATAGTGTCACGAGTCTCGGTTCTTACCCTGATTCTTCT-TGCCACG 178
Query 199 ACCCACTAATCTCTCTGAAACTCCCAAGTTTCAAACCAAACTACGTCTATCAACTTCTCC 258
|||||||||||||||||||||| ||| |||| ||||||||| |||||| ||| | |||||
Sbjct 179 ACCCACTAATCTCTCTGAAACTACCATGTTTTAAACCAAACGACGTCTTTCACCGTCTCC 238
Query 259 ATACCCAACTCCACGATCATGTCATGTCCGAACAAATATCTTATAAGATTGTCGAAGCCC 318
| | |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 239 AAAGCCAACTCCACGATCATGTCATGTCCGAACAGATATCTTCTAAGATTGTCGAAGCCC 298
Query 319 AACAACGGCAAAGAAGTCAAAGTTTTTACTTTCCACAACAACAACCTTTATTCATGATAG 378
||| || ||||||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct 299 AACGAC---AAAGAAGTCAAAGTTTTTACT--C-ACAACAACAACCTTTATTCATGATTG 352
Query 379 TCTCTGTCAAATTGACACACAAAG-TATACAACGTTGTGTCTTGTAATTCTGCTTTGG-A 436
|||||||||||||||| || |||| |||||| ||||| |||||| |||| || | |
Sbjct 353 TCTCTGTCAAATTGACTCA-AAAGGTATACAGTGTTGTCCCTTGTATTTCTTCTCCGTCA 411
Query 437 CCAAGAGA-GCCaagaagaagaagaagaaTCCAAGACTTGTGCTATCTGTTTGGAGAATT 495
||| ||| | || ||||||||||||| |||||||||| |||||||||||||||
Sbjct 412 GCAACAGATGTG--GACCAAGAAGAAGAATCGGAGACTTGTGCAATCTGTTTGGAGAATA 469
Query 496 TGTCGAGATCCGAGGATTACTGCGAGATGCCT-ACTTGTTCGCATAGTTTTCATGAACCA 554
|||||||||| ||| |||| ||| |||||||| | |||| |||| ||| ||||||| |
Sbjct 470 TGTCGAGATCTGAGAATTATTGCCAGATGCCTTA-TTGTAAGCATTGTTATCATGAAGGA 528
Query 555 TGTCTCACTCA-GTGGTTGACTCGAGATAATAACTCGTGCCCTCTCTGTCGCAAACCTGT 613
||| |||| || |||| ||| | | |||||||||| |||||||||||||||||||||||
Sbjct 529 TGTGTCAC-CAAGTGGGTGATTGGTCATAATAACTCTTGCCCTCTCTGTCGCAAACCTGT 587
Query 614 TGACAAA 620
|||||||
Sbjct 588 TGACAAA 594
> AT4G14149.1 | Symbols: | Pseudogene of AT2G24480; zinc finger
(C3HC4-type RING finger) family protein | chr4:8157975-8158349
REVERSE LENGTH=375
Length=375
Score = 274 bits (148), Expect = 8e-73
Identities = 287/351 (82%), Gaps = 22/351 (6%)
Strand=Plus/Plus
Query 237 AACTACGTCTATCAACTTCTCCATAC-CCAACTCCACGATCATGTCATGTCCGAACAAAT 295
|||||||||||||||| ||| || || |||||||||||||| || | |||||| ||||||
Sbjct 7 AACTACGTCTATCAACGTCTTCA-ACGCCAACTCCACGATCGTGACCTGTCCGGACAAAT 65
Query 296 ATCTTATAAGATTGTCGAAGCCCAACAACGGCAAAGAAGTCAAAGTTTTTACTT-TC-C- 352
|| || |||||||||||||| || |||| |||||||||||||||||||||||| | |
Sbjct 66 ATGTTCTAAGATTGTCGAAG-CC--CAACTGCAAAGAAGTCAAAGTTTTTACTTGCCACA 122
Query 353 ACAA---CAACAACCTTTATTCATGATAGTCTCTGTCAAATTGACACACAAAGT-ATACA 408
|||| ||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 123 ACAACGTCAACAACCTTTATTCATGATAGTCTCTGTCAGATTGACACACAA-GTTATACA 181
Query 409 ACGTTGTGTCTTGTAATTCTGCTT--T-GGACCA-AGAGA-GCCaagaagaagaagaaga 463
|||||| |||||| |||| || | || | | ||| | | |||||||||||||
Sbjct 182 GTGTTGTGCCTTGTATTTCTTCTCCGTCGG-CGACAGATTTGG-ACCAAGAAGAAGAAGA 239
Query 464 aTCCAAGACTTGTGCTATCTGTTTGGAGAATTTGTCGAGATCCGAGGATTACTGCGAGAT 523
||| |||||||||| ||||||||||||||| |||||||||| ||| ||| ||| ||||
Sbjct 240 ATCGGAGACTTGTGCAATCTGTTTGGAGAATATGTCGAGATCTGAGAATTGTTGCCAGAT 299
Query 524 GCCT-ACTTGTTCGCATAGTTTTCATGAACCATGTCTCACTCAGTGGTTGA 573
|||| | |||| |||| | | ||||||| |||| ||||| ||||| |||
Sbjct 300 GCCTTA-TTGTAAGCATTGCTATCATGAAGGATGTGTCACTAAGTGGGTGA 349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31496810169
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5