BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948875
Length=292
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43185.1 | Symbols: | Expressed protein | chr5:17338462-173... 444 2e-124
> AT5G43185.1 | Symbols: | Expressed protein | chr5:17338462-17338861
REVERSE LENGTH=400
Length=400
Score = 444 bits (240), Expect = 2e-124
Identities = 273/288 (95%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 6 AAGGAAACTCAGGAGATGAGAAGAAAAATTTGGTGGTTGTTTATGAAA--ATCAATATAA 63
||||||||||||||||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct 42 AAGGAAACTCAGGAGATGAGAAGAAAATTTTGGTGGTTGTTTAT-AAACTAT-AATATAA 99
Query 64 TACACATCAAATCTTTGACACGACACCAACTTAAAGAAGATGAAGAAGCTGCATTGATCT 123
||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||
Sbjct 100 TACACATCAAATCTTTGACACGATACCAACTTGAAGAAGAAGAAGAAGCTGCATTGATCT 159
Query 124 TCCCAAAAGATCCTCCATGGTTCAAGGCATGGATGGTTCCTGTGATGATGCTTTTCGTTT 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 TCCCAAAAGATCCTCCATGGTTCAAGGCATGGATGGTTCCTGTGATGATGCTTTTCGTTT 219
Query 184 TCTTTGTCTTTTCTATTGTAGGAATTTGTCGACGTTGTCGAAATTGTCGCCGTGGTGAAA 243
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 220 TCTTTGTATTTTCTATTGTAGGAATTTGTCGACGTTGTCGCAATTGTCGCCGTGGTGAAA 279
Query 244 ATTCTCCCAGCATTCATCCTATCACCTAATTATTTAGATTTTG-TTTT 290
|||||||||||||||||||||| | ||||||||||| |||| | ||||
Sbjct 280 ATTCTCCCAGCATTCATCCTATTAACTAATTATTTA-ATTTAGATTTT 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13471756732
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5