BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948881
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43170.1 | Symbols: AZF3, ZF3 | zinc-finger protein 3 | chr5... 808 0.0
AT5G43160.1 | Symbols: QWRF9 | Family of unknown function (DUF5... 424 7e-118
> AT5G43170.1 | Symbols: AZF3, ZF3 | zinc-finger protein 3 | chr5:17330945-17331646
REVERSE LENGTH=702
Length=702
Score = 808 bits (437), Expect = 0.0
Identities = 549/602 (91%), Gaps = 12/602 (2%)
Strand=Plus/Plus
Query 19 CAATGGCGCTCGAAGCTCTTAATTCACCAAGATTGGTCGATGATTCCTCAAGATTTAATG 78
|||||||||| ||||||||||||||||||||||||||||| ||| ||| |||||| ||||
Sbjct 14 CAATGGCGCTTGAAGCTCTTAATTCACCAAGATTGGTCGAGGATCCCTTAAGATTCAATG 73
Query 79 GCGTTGAGCAGTGGACTAAAGGTAAGAAACGATCCAAACGATCAAGAACTGA---TCATC 135
|||||||||||||||| ||| ||||||||||||||||||| || ||| |||| |||||
Sbjct 74 GCGTTGAGCAGTGGACCAAATGTAAGAAACGATCCAAACGTTCGAGATCTGATCTTCATC 133
Query 136 ATAACAACCGTCTCACTGAAGAAGAGTATCTAGCTTTCTGTCTCATGCTTCTTGCTCGGG 195
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 134 ATAACCACCGTCTCACTGAGGAAGAGTATCTAGCTTTCTGTCTCATGCTTCTTGCTCGGG 193
Query 196 ACGGCAGCGATCTTGATTCTGTGACGG-CGAAGGAGAAGCCGGGTTATAAGTGTGGCGTT 254
| ||| |||||||||| |||||||||| | |||||||||| |||||||||||||||||
Sbjct 194 ATGGCGGCGATCTTGACTCTGTGACGGTTG-CGGAGAAGCCGAGTTATAAGTGTGGCGTT 252
Query 255 TGTTACAAGACGTTTTCGTCTTACCAAGCTCTCGGTGGTCATAAGGCGAGCCAGCAGG-G 313
||||||||||||||||||||||||||||||||||| |||||||| |||||||| | || |
Sbjct 253 TGTTACAAGACGTTTTCGTCTTACCAAGCTCTCGGCGGTCATAAAGCGAGCCACC-GGAG 311
Query 314 CTTATACGGCGGTGGAGATATTGATAA---GACACTATCCACCGCCGTGAAATCTCACGT 370
||||||||| |||||||| | |||||| ||||| ||||||||||||||||||||||||
Sbjct 312 CTTATACGGTGGTGGAGAGAATGATAAATCGACACCATCCACCGCCGTGAAATCTCACGT 371
Query 371 TTGTTCGGTTTGCGGGAAATCGTTCGCCACCGGTCAAGCTCTGGGCGGCCATAAGCGGTG 430
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 372 TTGTTCGGTTTGCGGGAAATCTTTCGCCACCGGTCAAGCTCTCGGCGGCCACAAGCGGTG 431
Query 431 CCACTACGACAGTGGCGTTTCGAATTCGGAAGGTGTGGGGTCTACTAGCCACGTCAGCAG 490
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 432 CCACTACGATGGTGGCGTTTCGAACTCGGAAGGTGTGGGGTCTACTAGCCACGTCAGCAG 491
Query 491 CAGTAGCCACCGCAGATTTGACCTTAATATTACGCCGGTGCAGGAATTCTCGCTGGAGGA 550
||||||||||| |||||||||||||||||| |||||||||| ||| |||| ||| ||
Sbjct 492 TAGTAGCCACCGTGGATTTGACCTTAATATTATACCGGTGCAGGGATTTTCGCCGGACGA 551
Query 551 CGAAGTGATGAGTCCGATGGCTA-TGAAGAAGCCTCGCCTGAAGTAAGTCTTTGTTGAAG 609
||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 552 CGAAGTGATGAGTCCGATGGCGACT-AAGAAGCCTCGCCTGAAGTAAGTCTTTGTTGAAG 610
Query 610 AC 611
||
Sbjct 611 AC 612
> AT5G43160.1 | Symbols: QWRF9 | Family of unknown function (DUF566)
| chr5:17329275-17331352 FORWARD LENGTH=1132
Length=1132
Score = 424 bits (229), Expect = 7e-118
Identities = 289/317 (91%), Gaps = 7/317 (2%)
Strand=Plus/Minus
Query 300 GCGAGCCAGCAGG-GCTTATACGGCGGTGGAGATATTGAT-AA--GACACTATCCACCGC 355
|||||||| | || |||||||||| |||||||| | |||| || ||||| |||||||||
Sbjct 1129 GCGAGCCA-CCGGAGCTTATACGGTGGTGGAGAGAATGATAAATCGACACCATCCACCGC 1071
Query 356 CGTGAAATCTCACGTTTGTTCGGTTTGCGGGAAATCGTTCGCCACCGGTCAAGCTCTGGG 415
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1070 CGTGAAATCTCACGTTTGTTCGGTTTGCGGGAAATCTTTCGCCACCGGTCAAGCTCTCGG 1011
Query 416 CGGCCATAAGCGGTGCCACTACGACAGTGGCGTTTCGAATTCGGAAGGTGTGGGGTCTAC 475
|||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1010 CGGCCACAAGCGGTGCCACTACGATGGTGGCGTTTCGAACTCGGAAGGTGTGGGGTCTAC 951
Query 476 TAGCCACGTCAGCAGCAGTAGCCACCGCAGATTTGACCTTAATATTACGCCGGTGCAGGA 535
||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||
Sbjct 950 TAGCCACGTCAGCAGTAGTAGCCACCGTGGATTTGACCTTAATATTATACCGGTGCAGGG 891
Query 536 ATTCTCGCTGGAGGACGAAGTGATGAGTCCGATGGCTA-TGAAGAAGCCTCGCCTGAAGT 594
||| |||| ||| ||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 890 ATTTTCGCCGGACGACGAAGTGATGAGTCCGATGGCGACT-AAGAAGCCTCGCCTGAAGT 832
Query 595 AAGTCTTTGTTGAAGAC 611
|||||||||||||||||
Sbjct 831 AAGTCTTTGTTGAAGAC 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29688380877
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5