BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948883
Length=881
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42640.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 579 2e-164
AT2G18490.1 | Symbols: | C2H2-like zinc finger protein | chr2:... 449 2e-125
> AT5G42640.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr5:17088695-17089597 FORWARD LENGTH=903
Length=903
Score = 579 bits (313), Expect = 2e-164
Identities = 646/802 (81%), Gaps = 42/802 (5%)
Strand=Plus/Plus
Query 73 ATCGCATGAACCATGA-AGATTTGTTTGATTCTCCTCCATCCTTT-TCTTCTTATCAAAA 130
|||||||||| ||| | |||||||||| ||||||||| | |||| ||||||||||||||
Sbjct 122 ATCGCATGAATCAT-AGAGATTTGTTTTCTTCTCCTCC-TTCTTTCTCTTCTTATCAAAA 179
Query 131 TTCACATGCCTCTTCATTTTCTTTTCAAATTAACAATTCACATATGAAC-TATCATATGA 189
||||||| |||||||| |||| || |||| |||||||||||| || |||||||||
Sbjct 180 TTCACATATCTCTTCATCTTCTGTTGGGTTTAATAATTCACATATG-ACTTATCATATGC 238
Query 190 TGAGGAGAAACTT-TGATTCTTTTTCTGGTGCCAAATATTTGTCTATTCAAA-ATAATTC 247
||| ||||| || ||||||| |||| |||| | ||||| |||| | ||| || ||||
Sbjct 239 TGAAAAGAAA-TTATGATTCTGTTTCCCGTGCTGATTATTTCTCTACT-AAAGATCATTC 296
Query 248 TCATATTACTCAAATTTCTTTTACTGAAACCATCACAAATAGGTATACTACTATTGTTCC 307
|||| |||||||| | ||||| ||| ||||||||||||||| ||||||||||||||||||
Sbjct 297 TCATTTTACTCAAGTATCTTTCACTCAAACCATCACAAATAAGTATACTACTATTGTTCC 356
Query 308 TACCAATACACTTGATAAT-TTCCAAC-ATGAAATTAAACGTGTCAAACGTTCCATGGAT 365
| |||||| | |||| | | || | || |||| ||| |||||||||||| |||| |||
Sbjct 357 TTCCAATATATTTGACACTGTT-C-ACTATGATATTGGTCGTGTCAAACGTGCCATAGAT 414
Query 366 TCTAATACTAATATTTGGAATCCTGTATCTTATCCT-CAAAtttttttCGATAATCAGTG 424
| | || ||||||||||||||| |||| ||| | |||| ||| ||| || ||
Sbjct 415 T-T--TAGAAATATTTGGAATCCTAAATCTCATCTTCCAAAAAAATTT-AATAGGCAATG 470
Query 425 CGAAATTTTGAATCCTACACCTCTTAGTGTCAT-TTATCCGCGCCAACATTCTGCTGCTC 483
||| |||||||||||||| ||||||| | || | || ||||| ||| |||| |||| ||
Sbjct 471 CGAGATTTTGAATCCTACCCCTCTTAATATCGTCTT-TCCGCACCAGGATTCAGCTGATC 529
Query 484 TTCATCATTCAG--ATTTTTCTTCCT-TTACATCAAAGTGTAACCATG-TTCCTCACGCT 539
||| |||| || ||| || || || | |||||||| ||||||| || | || | |
Sbjct 530 GTCAACATTTAGACATTATT-TT-CTCGT-CATCAAAGCACAACCATGTTTTC-CAAGAT 585
Query 540 AGTCGAT-CTTCGAAGAAAATTTCCAAACCAACAAATCTTTTTGAAAGAA-CTACTTATT 597
|||||| ||| ||||||||||||| ||||||| ||||| ||||||| || ||| || ||
Sbjct 586 GGTCGATCCTT-GAAGAAAATTTCCGAACCAACCAATCTGTTTGAAA-AATCTAATTCTT 643
Query 598 ATGTTCATTCTGAAGAAGATGAGAAAAGT-GATGATAATCAATATGATGGACGTACACAT 656
||| ||||| ||||||||||||||| | |||| | ||||||||||||| |||||||||
Sbjct 644 ATG---ATTCTCAAGAAGATGAGAAAA-TCGATGCTTATCAATATGATGGTCGTACACAT 699
Query 657 AGTATACCATATGTGAAATATGGTCCATATACGTGTCCCAAGTGCAATGGTGTGTTTGAC 716
||| |||| ||| |||||| ||||||||||| ||||||| ||| || |||||||||||
Sbjct 700 AGTCTACCGTATACGAAATACGGTCCATATACATGTCCCAGGTGTAACGGTGTGTTTGAT 759
Query 717 ACTTCTCAAAGATTTGCTGCACATATGTTATCTCACTACAACAGTGAGACGAACAAAGAA 776
|||||||||| |||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 760 ACTTCTCAAAAATTTGCTGCACATATGTTATCTCACTACAATAATGAGACGGACAAAGAA 819
Query 777 AAAG-CTTTGAGATTTCGTGCAAGAAATAAAAGAAA-ATTTCGTAAGCTCATGGCCGGTC 834
| || | |||||||||||||||||||||| || || ||||||| | |||| | |||
Sbjct 820 AGAGACCAA-AGATTTCGTGCAAGAAATAAAA-AACGATATCGTAAGTTTATGGACAGTC 877
Query 835 AGAAAATATCAAAACAGAGGAT 856
|||||||||||||||| |||
Sbjct 878 TTAAAATATCAAAACAGAAGAT 899
> AT2G18490.1 | Symbols: | C2H2-like zinc finger protein | chr2:8020668-8021423
FORWARD LENGTH=756
Length=756
Score = 449 bits (243), Expect = 2e-125
Identities = 521/652 (80%), Gaps = 31/652 (5%)
Strand=Plus/Plus
Query 189 ATGAGGAGAAACTTTGATTCTTTTTCTGGTGCCAAATATTTGTCTATTCAAA-ATAATTC 247
|||||||||||| |||||| | |||| || || | |||||| ||||| ||| ||||| |
Sbjct 1 ATGAGGAGAAACATTGATTATGTTTCCAGTACCGATTATTTGCCTATT-AAAGATAATCC 59
Query 248 TCATATTACTCA-AATTTCTTTTACTGAAACCATCACAAATAGGTATACTACTATTGTTC 306
|||| ||||| | | ||||||| ||| ||||||| || |||||||||| | |||||||||
Sbjct 60 TCATCTTACT-AGAGTTTCTTTCACTCAAACCATTACTAATAGGTATAGTTCTATTGTTC 118
Query 307 CTACCAATACACTTGATAAT-TTCCAACATGAAATTAAACGTGTCAAACGTTCCATGGAT 365
|||||||| |||||||| | || ||| |||| ||| ||| |||||||||| ||||||||
Sbjct 119 CTACCAATTCACTTGATGCTGTT-CAATATGATATTGAACTTGTCAAACGTGCCATGGAT 177
Query 366 TCTAATA-CTAATATTTGGAATCCTGTATCTTATCCT-CAAAtttttttCGATAATCAGT 423
||||| | | ||||||||||||||||| | ||||||| |||||||| || | ||| || |
Sbjct 178 TCTAA-ACCCAATATTTGGAATCCTGTTTTTTATCCTCCAAATTTTCTT-GGTAAACAAT 235
Query 424 GCGAAATTTTGAATCCTACA-CCTCTTAGTGTCATTTATCCGCGCCAACATTCTGCTGCT 482
|||| ||||| || ||| | ||||| | |||||||| ||| | |||| |||||| | |
Sbjct 236 GCGAGATTTTAAACCCT-GAGCCTCTAAATGTCATTTTTCCTCACCAAAATTCTGGAGAT 294
Query 483 CTTC-ATCATTCAGA-TTTTTCTTCCTT-TACATCAAAGTGTAACCATGTTCCTCACG-- 537
| || || ||| | | | || |||||| | |||||||| |||||||| || | |
Sbjct 295 CGTCAAT-ATTTAAACATGTT-TTCCTTGT-CATCAAAGCATAACCATGATCAAAATGTT 351
Query 538 ---C-T--A-GTCGATCTTCGA-AGAAAATTTCCAAACCAA-CAAATCTTTTTGAAAGAA 588
| | | | |||||||||| | ||||| ||||||||| || || |||||| ||
Sbjct 352 TTCCATGAAGGCCGATCTTCGACA-AAAATCCCCAAACCAACCATGTC-CATTGAAAAAA 409
Query 589 CTACTTATTATGTTCATTCTGAAGAAGATGAGAAAAGTGATGATAATCAATATGATGGAC 648
||||| | ||| | ||| ||||||| | ||||||||||| ||| |||||||||||| |
Sbjct 410 CTACTGAATATATAGATTGTGAAGAAAACGAGAAAAGTGACGATGCTCAATATGATGGTC 469
Query 649 GTACACATAGTATACCATATGTGAAATATGGTCCATATACGTGTCCCAAGTGCAATGGTG 708
| | ||||||| |||||||| |||||||||||||||||| ||||| |||||||| ||
Sbjct 470 GAATACATAGTTTACCATATAAGAAATATGGTCCATATACATGTCCTAAGTGCAACAGTA 529
Query 709 TGTTTGACACTTCTCAAAGATTTGCTGCACATATGTTATCTCACTACAACAGTGAGACGA 768
| ||||| |||||||||| ||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 530 TATTTGATACTTCTCAAAAATTTGCTGCACATATGTCATCTCACTACAAGAGTGAAACGA 589
Query 769 ACAAAGAAAAAGCTTTGAGATTTCGTGCAAGAAATAAAAGAAAATTTCGTAA 820
| ||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 590 ATAAAGAAAGAGCTCAAAGATTTCGTGCAAGAAATAAAAGAAAATATCGTAA 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43000429832
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5