BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948884

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43150.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   433    6e-121


> AT5G43150.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; 
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:17325013-17325923 
FORWARD LENGTH=573
Length=573

 Score =  433 bits (234),  Expect = 6e-121
 Identities = 279/300 (93%), Gaps = 6/300 (2%)
 Strand=Plus/Plus

Query  3    TCTCTACACTTTGATCTAATGGCCGGCCTAAGATGGAGAGAGTGGTGGAACACGATGGCC  62
            |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  46   TCTCTACACTTTCATCTAATGGCCGGCCTGAGATGGAGAGAGTGGTGGAACACGATGGCC  105

Query  63   TTCCCCACCCGGCGCATCTGGAATCGTTTCACCGTTCGGGTCGGGTTTCGACATAGCGGA  122
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  106  TTCCCCACCCGGCGTATCTGGAATCGTTTCACCGTTCGCGTCGGGTTTCGACACAGCGGA  165

Query  123  CTCTTGAGGTTACAAAACGACGTGAGTTCTTGCGAGTACGAAGACATACACATAATGTGG  182
            || ||||||||| || | |||||||||||||||||||| |||||||||||||||||||||
Sbjct  166  CTTTTGAGGTTAGAACATGACGTGAGTTCTTGCGAGTATGAAGACATACACATAATGTGG  225

Query  183  AATCTGTTACACAAGAACGAAGATCTTACACGTACCGCACCAATCCAACAACAACAACAA  242
            ||| ||||||||||||| ||||||||||||||  | | ||||||||||||||||||||||
Sbjct  226  AATTTGTTACACAAGAATGAAGATCTTACACG--C-GTACCAATCCAACAACAACAACAA  282

Query  243  -AG-G-AAGAAACCTTGCTGGAATCTTCTTGGTTCATATCTTTGCCAAAGATTCTGATCC  299
             || | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  283  CAGAGGAAGAAACCTTGTTGGAATCTTCTTGGTTCGTATCTTTGCCAAAGATTCTGATCC  342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5