BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948885 Length=804 Score E Sequences producing significant alignments: (Bits) Value AT5G43140.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 1188 0.0 > AT5G43140.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr5:17321545-17323408 FORWARD LENGTH=974 Length=974 Score = 1188 bits (643), Expect = 0.0 Identities = 758/812 (93%), Gaps = 13/812 (2%) Strand=Plus/Plus Query 1 GAAGCATCGGAGAACCaaaa-aa-aTGAACATCGTTGGATTGAGCAAACGTTTCTTCTCC 58 |||||||||| ||| |||| || ||||| |||||||||||||||||||||||||||||| Sbjct 4 GAAGCATCGGCGAA--AAAAGAAGATGAATATCGTTGGATTGAGCAAACGTTTCTTCTCC 61 Query 59 GATCGTCGTTCTCTTAACGGAATCAACAATGCTCTCGTGAAAACTGTGTTCTCCGGTCGG 118 |||||||| |||||| |||| ||||||||||||||| ||||||| |||||| |||||||| Sbjct 62 GATCGTCGCTCTCTTCACGGGATCAACAATGCTCTCTTGAAAACAGTGTTCACCGGTCGG 121 Query 119 AAACCGA-TCTTCGGATTCTCCGGCCGATCGTTTCACGAGCTGCGCAAAACTGGGAAATT 177 ||||||| || |||||||||||||||||||| |||||||||| |||||||||||||| || Sbjct 122 AAACCGATTC-TCGGATTCTCCGGCCGATCGATTCACGAGCTACGCAAAACTGGGAATTT 180 Query 178 CGTAGTTCCTCGTGTCTTCTCCGTGTCGCGAAATCTATCGACTAATGCTTCG---TCTTC 234 |||| | |||||||| ||||||||||||||||||||| |||| || |||||| ||||| Sbjct 181 CGTAATCCCTCGTGTTTTCTCCGTGTCGCGAAATCTAACGACGAAGGCTTCGTCTTCTTC 240 Query 235 TTCGAAACAACCTGCGTTTCTACGATGGTATTTGAAAAAGCTCGAATCACATCCTTTCAT 294 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 241 TTCGAAACAACCTGCGTTTCTACGATGGTATTTGAGAAAGCTCGAATCACATCCTTTTAT 300 Query 295 GACTAAGAGTGTCACTACTTCTGTCATTTATATGGCCGCAGATCTCACTTCTCAGATGAT 354 |||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 301 GACTAAGAGTATCACTACTTCTGTCATCTATATGGCTGCAGATCTCACTTCTCAGATGAT 360 Query 355 CACGATGCAGCCAA-TGGGTTCTTTTGACCTGATCAGAACAGCCAGAATGGCTAGCTTTG 413 ||| ||| |||||| | |||||||||||| |||| |||||||| |||||||| ||||||| Sbjct 361 CACAATGGAGCCAACT-GGTTCTTTTGACTTGATAAGAACAGCGAGAATGGCGAGCTTTG 419 Query 414 GGTTGATATTTCTCGGGCCGTCACAGCATTTGTGGTTCAGTTATCTTTCAAAGATATTGC 473 |||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| Sbjct 420 GGTTGATATTTCTCGGGCCGTCTCAGCATCTGTGGTTCAGTTATCTTTCGAAGATATTGC 479 Query 474 CAAAGCGCGACGTATTGACAACCTTTAAGAAAATAATGATGGGGCAGGTTCTTTTCGGAC 533 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 CAAAGCGCGACGTGTTGACAACCTTTAAGAAAATAATGATGGGGCAGGTTCTTTTCGGAC 539 Query 534 CTGTTAGCAACACGGTCTTCTATTCCTACAATGCTGCTTTACAAGGTGAAAATTCTGGA- 592 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || Sbjct 540 CTGTTAGCAACACAGTCTTCTATTCCTACAATGCTGCTTTACAAGGCGAAAATTCT-GAG 598 Query 593 GAAATTTTGGCGAGATTAAAGCGAGATCTTCTGCCAACATTGAAAAATGGACTTATGTAT 652 |||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 599 GAAATTGTGGCGAGATTGAAGAGAGATCTTCTGCCAACATTGAAAAATGGACTTATGTAT 658 Query 653 TGGCCGGTCTGTGATTTTGTTACATTCAAGTATGTGCCAGTTCATCTACAGCCGCTGATG 712 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 659 TGGCCGGTCTGTGATTTTGTTACATTCAAGTATGTGCCAGTTCATCTACAGCCACTGATG 718 Query 713 AATAGCTCGTGTGCATATATATGGACGATTTATTTGACATATATGGCAAACCAGACGAAA 772 ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 719 AATAGCTCGTGCGCATATATATGGACAATCTATTTGACATATATGGCAAACCAGACGAAA 778 Query 773 GCTGACAGCTGAACAATGACAAGTATGAGTGT 804 |||||||||||||||||||||||||||||||| Sbjct 779 GCTGACAGCTGAACAATGACAAGTATGAGTGT 810 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39132400513 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5