BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948885
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43140.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 1188 0.0
> AT5G43140.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
family protein | chr5:17321545-17323408 FORWARD LENGTH=974
Length=974
Score = 1188 bits (643), Expect = 0.0
Identities = 758/812 (93%), Gaps = 13/812 (2%)
Strand=Plus/Plus
Query 1 GAAGCATCGGAGAACCaaaa-aa-aTGAACATCGTTGGATTGAGCAAACGTTTCTTCTCC 58
|||||||||| ||| |||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 4 GAAGCATCGGCGAA--AAAAGAAGATGAATATCGTTGGATTGAGCAAACGTTTCTTCTCC 61
Query 59 GATCGTCGTTCTCTTAACGGAATCAACAATGCTCTCGTGAAAACTGTGTTCTCCGGTCGG 118
|||||||| |||||| |||| ||||||||||||||| ||||||| |||||| ||||||||
Sbjct 62 GATCGTCGCTCTCTTCACGGGATCAACAATGCTCTCTTGAAAACAGTGTTCACCGGTCGG 121
Query 119 AAACCGA-TCTTCGGATTCTCCGGCCGATCGTTTCACGAGCTGCGCAAAACTGGGAAATT 177
||||||| || |||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 122 AAACCGATTC-TCGGATTCTCCGGCCGATCGATTCACGAGCTACGCAAAACTGGGAATTT 180
Query 178 CGTAGTTCCTCGTGTCTTCTCCGTGTCGCGAAATCTATCGACTAATGCTTCG---TCTTC 234
|||| | |||||||| ||||||||||||||||||||| |||| || |||||| |||||
Sbjct 181 CGTAATCCCTCGTGTTTTCTCCGTGTCGCGAAATCTAACGACGAAGGCTTCGTCTTCTTC 240
Query 235 TTCGAAACAACCTGCGTTTCTACGATGGTATTTGAAAAAGCTCGAATCACATCCTTTCAT 294
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 241 TTCGAAACAACCTGCGTTTCTACGATGGTATTTGAGAAAGCTCGAATCACATCCTTTTAT 300
Query 295 GACTAAGAGTGTCACTACTTCTGTCATTTATATGGCCGCAGATCTCACTTCTCAGATGAT 354
|||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 301 GACTAAGAGTATCACTACTTCTGTCATCTATATGGCTGCAGATCTCACTTCTCAGATGAT 360
Query 355 CACGATGCAGCCAA-TGGGTTCTTTTGACCTGATCAGAACAGCCAGAATGGCTAGCTTTG 413
||| ||| |||||| | |||||||||||| |||| |||||||| |||||||| |||||||
Sbjct 361 CACAATGGAGCCAACT-GGTTCTTTTGACTTGATAAGAACAGCGAGAATGGCGAGCTTTG 419
Query 414 GGTTGATATTTCTCGGGCCGTCACAGCATTTGTGGTTCAGTTATCTTTCAAAGATATTGC 473
|||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||
Sbjct 420 GGTTGATATTTCTCGGGCCGTCTCAGCATCTGTGGTTCAGTTATCTTTCGAAGATATTGC 479
Query 474 CAAAGCGCGACGTATTGACAACCTTTAAGAAAATAATGATGGGGCAGGTTCTTTTCGGAC 533
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAAAGCGCGACGTGTTGACAACCTTTAAGAAAATAATGATGGGGCAGGTTCTTTTCGGAC 539
Query 534 CTGTTAGCAACACGGTCTTCTATTCCTACAATGCTGCTTTACAAGGTGAAAATTCTGGA- 592
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 540 CTGTTAGCAACACAGTCTTCTATTCCTACAATGCTGCTTTACAAGGCGAAAATTCT-GAG 598
Query 593 GAAATTTTGGCGAGATTAAAGCGAGATCTTCTGCCAACATTGAAAAATGGACTTATGTAT 652
|||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAAATTGTGGCGAGATTGAAGAGAGATCTTCTGCCAACATTGAAAAATGGACTTATGTAT 658
Query 653 TGGCCGGTCTGTGATTTTGTTACATTCAAGTATGTGCCAGTTCATCTACAGCCGCTGATG 712
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 659 TGGCCGGTCTGTGATTTTGTTACATTCAAGTATGTGCCAGTTCATCTACAGCCACTGATG 718
Query 713 AATAGCTCGTGTGCATATATATGGACGATTTATTTGACATATATGGCAAACCAGACGAAA 772
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 719 AATAGCTCGTGCGCATATATATGGACAATCTATTTGACATATATGGCAAACCAGACGAAA 778
Query 773 GCTGACAGCTGAACAATGACAAGTATGAGTGT 804
||||||||||||||||||||||||||||||||
Sbjct 779 GCTGACAGCTGAACAATGACAAGTATGAGTGT 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39132400513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5