BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948886
Length=2515
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43130.2 | Symbols: TAF4 | TBP-associated factor 4 | chr5:17... 3819 0.0
> AT5G43130.2 | Symbols: TAF4 | TBP-associated factor 4 | chr5:17315461-17321185
REVERSE LENGTH=2747
Length=2747
Score = 3819 bits (2068), Expect = 0.0
Identities = 2257/2348 (96%), Gaps = 14/2348 (1%)
Strand=Plus/Plus
Query 10 AGCTAATTTCAATGGATCCTTCAATTTTCAAGCTCCTCGAAGAAGACGAGGATGAATCGA 69
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 32 AGCT-ATTTCAATGGATCCTTCAATTTTCAAGCTCCTTGAAGAAGATGAGGATGAATCGA 90
Query 70 TGCATTCAGGAGCTGACGTAGATGCGTTCCAAGCTGCTCTGAATCGTGATATTGAAGGTT 129
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 91 TGCATTCAGGAGCTGACGTAGACGCGTTCCAAGCTGCTCTGAATCGTGATATTGAAGGTT 150
Query 130 CTATGACTACTACACTACCGCTCGTGGCAAACCCAGGAAACAATCACTCTCCCAACCAGC 189
||||||| ||| || |||| | |||| |||||||||||||||| || ||| ||| ||||
Sbjct 151 CTATGACAACTTCAATACCCCACGTGACAAACCCAGGAAACAACCATTCTTCCAGGCAGC 210
Query 190 AGTTTGCGACATGGAAGAATGGTATTGGAGATTCTAATATCAATGTCCAGACGCAGCACA 249
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 211 AGTTTTCGACATGGAAGAATGGTATTGGAGATTCTAATATCAATGTCCAGACTCAGCATA 270
Query 250 GCCTTGAAAATACTCAAATGAAGGAGCAACAAGGATCAGCTACAGCTATAGAAAATCAAC 309
||||||||| |||||| |||||||||||| ||||||| | | || ||||||||||||
Sbjct 271 GCCTTGAAAGTACTCAGATGAAGGAGCAAGAAGGATC-G----A-CTTTAGAAAATCAAC 324
Query 310 ATCAACATGATTTGAAACACGCAAATGAACCTCATTTACAACACAACCAGCCTCAAGACC 369
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 325 ATCAACATGATTTGAAACGCGCAAATGAACCTCATTTACAACACAACCAGCCTCAAGACC 384
Query 370 TTCATCGAGCTGGTCAATTCTGGGAGAATCCCTCGCAGGTCCCCCAAACAACTGGGTTAC 429
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 385 TTCATCGAGCTGGTCAACTCTGGGAGAATCCCTCGCAGGTCCCCCAATCAACTGGGTTAC 444
Query 430 CGAGTT-CTGAAAAGAATCCTACTGGTAATGAATCAGATAGATCACATAATCAAGAGAGT 488
||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 445 CGA-TTAGTGAAAAGAATCCTACTGGTAATGAATCAGATAGATCCCATAATCAAGAGAGT 503
Query 489 GAATCTCAGTATATGAAACTGCAAAAGATGAGTAGTCAACAGGCTCGGGGAGTGGAACCG 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 GAATCTCAGTATATGAAACTGCAAAAGATGAGTAGTCAACAGGCTCGGGGAGTGGAACCG 563
Query 549 CCTGTTAACCCTATAAATGTTAACCCTATGAACCGCAACCCTAAGCAAGTACCATTTGCT 608
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 564 CCTGTTAACCCTATGAATGTTAACCCTATAAACCGCAACCCTAAGCAAGTACCATTTGCT 623
Query 609 GCTTTGCTTCCTACTTTAATGAACCAACTCGATAAAGATAGAGCACTGCAGCTCCGTACC 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 GCTTTGCTTCCTACTTTAATGAACCAACTCGATAAAGATAGAGCACTGCAGCTCCGTACC 683
Query 669 CTATATGCTAGACTTAAGAAAAATGAAATTCCCAAAGAGGGGTTCACACGACATATGAAG 728
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 684 CTATATGCTAGACTTAAGAAAAATGAAATCCCCAAAGAGGGGTTCACACGACATATGAAA 743
Query 729 GATATTGTAGGCGATCAGATGCTCAGGATGGCAGTTAGTAAACTCCAACAGGTGAACTAT 788
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 744 GATATTGTGGGCGATCAGATGCTCAGGATGGCAGTTAGTAAACTCCAGCAGGTGAACTAT 803
Query 789 AACCAGGGAAAAATTGGAATTCAAGCTCCTTCTACTGAAATCAATAATCAAAAATCTCAG 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 AACCAGGGAAAAATTGGAATTCAAGCTCCTTCTACTGAAATCAATAATCAAAAATCTCAG 863
Query 849 TCTGATCCTCGTGCAGTCCACCTTAACCAACTACCGTCCTCAGCTTCAGGCACCTTAGGC 908
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 864 TCTGATCCTCGTGCAGTCCATCTTAACCAACTACCGTCCTCAGCTTCAGGCACCTTAGGC 923
Query 909 AGTTCAGTTCCGGTACAGGGACTTACCAAACATCCGCAGCACCAGATGCAGCATCCACCA 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 AGTTCAGTTCCGGTACAGGGACTTACCAAACATCCGCAGCACCAGATGCAGCATCCACCA 983
Query 969 AGTTCTTTTTCTATGTATACCACCTCTGGTAGTTTTCACACATACCCGGGTCCAAACACC 1028
||||||||| ||||||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct 984 AGTTCTTTTCCTATGTATACCACTTCTGGTAGTTTTCATTCATTCCCGGGTCCAAACACC 1043
Query 1029 AATGCTTCTGGTTCCTCGTTGAGGCCTCACCTTCATGATTCCCATATGAGACATGTGACA 1088
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1044 AATGCTTCTGGTTCCACGTTGAGACCTCACCTTCATGATTCCCATATGAGACATGTGGCA 1103
Query 1089 CATAACCAGCCTATGGGATCAACTGGTCTTGGAGGACCGCCCCAGTCGACCACAAACATG 1148
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1104 CATAACCAGCCTATGGGATCAACTGGTCTTGGAGGACCGCCCCAGTCTACCACAAACATG 1163
Query 1149 ATGACTATGCCCAAGTTTGAGAGGCCAAGTTCTGTAAATGATCCGAATAGGGTTCAAGGT 1208
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1164 ATGACTATGCCCAAGTTTGAGAGGCCAAGTTCTGTAAATGATCCGAGTAGGGTTCAGGGT 1223
Query 1209 GGCGCTACATCGCACTTCCAGAACAGCTCATC---GCCTCTAAATTCTGCACCTGGTCAA 1265
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1224 GGCGCTACATCGCACTTCCAGAACAGCTCATCATTGCCTCTAAATTCTGCACCTGGTCAA 1283
Query 1266 GGATCATCAGTGTCCAATGTAAAGCAGGAATTAGTTGATCAAAGTTTTGAAAAGAATAAT 1325
||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1284 GGATCATCAGTGTCCCACGTAAAGCAGGAATCAGTTGATCAAAGTTTTGAAAAGAATAAT 1343
Query 1326 GCAGCCTCAGTGACTTCGAATGAGGACTTAGAGAAGGAGTCCTCTAGAATGGTTTTATCC 1385
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 GCAGCCTCAATGACTTCGAATGAGGACTTAGAGAAGGAGTCCTCTAGAATGGTTTTATCC 1403
Query 1386 ACACCTAACAACATGGGGCCTGCAAGCTCTGTTTCTCCATCCATGACAACTCAACTAGAC 1445
|| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1404 ACGCCTAACAACATGGCGCCTGCAAGCTCTGTTTCTCCTTCCATGACAACTCAACTAGAC 1463
Query 1446 GCTAGCACAACGATGAATTCTCGTGGCCCATTGGGAAGCTCTCAAGGAGGAG-TAAATGC 1504
|| |||||||| ||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 1464 GCCAGCACAACTATGAATTCTCGTGGCCCATTGGGAACCTCTCAAGGAGGAGCT-AATGC 1522
Query 1505 TAGGATGCCACCTAAAAAGCCTTCTGTTGGTCAGAAAAAACCTCTTGAGTCATTAGGTTC 1564
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1523 TAGGATGCCACCCAAAAAGCCTTCTGTTGGTCAGAAAAAACCTCTTGAGACATTAGGTTC 1582
Query 1565 TTCACCTCCACCACCAAGCAAGAAGCAAAAAGTAGCAGGGAATTCTATGGATCAAAGTAT 1624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 TTCACCTCCACCACCAAGCAAGAAGCAAAAAGTAGCAGGGAATTCTATGGATCAAAGTAT 1642
Query 1625 TGAACAGCTCAATGATGTCACTGCAGTCAGTGGTGTTAATCTCAGGGAAGAGGAAGAACA 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 TGAACAGCTCAATGATGTCACTGCAGTCAGTGGTGTTAATCTCAGGGAAGAGGAAGAACA 1702
Query 1685 ATTATTTTCTGGGGCCAAGGAAGATGGTCGTGTTTCCGAAGCATCTCGGAGAGTTGTGCA 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 ATTATTTTCTGGGGCCAAGGAAGATGGTCGTGTTTCCGAAGCATCTCGGAGAGTTGTGCA 1762
Query 1745 CGAAGAAGAAGAAAGATTAATCTTGCAGAAAAATCCTCTGCAGAGAAAGCTGGCGGAAAT 1804
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1763 CGAAGAAGAAGAAAGATTAATCTTGCAGAAGAATCCTCTGCAAAGAAAGCTGGCGGAAAT 1822
Query 1805 TATGGCGAAAGCTGGTTTAAAGCAGATAAGCAATGATGTCGAACGGTGCTTGTCTTTGTG 1864
|||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1823 TATGGCTAAAGCCGGGTTAAAGCAGATAAGCAATGATGTCGAACGGTGCTTATCTTTGTG 1882
Query 1865 TGTGGAGGAAAGGATGCGAGGACTATTATCCCATATAATACGGCTGTCAAAGCAGCGGGT 1924
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1883 TGTGGAGGAAAGGATGCGAGGACTATTATCCCATATAATTCGGTTGTCAAAGCAGCGGGT 1942
Query 1925 TGATGCTGAGAAATCTAGACACCGGACTTTTATCACATCAGATATTCGGCTACAAATCAA 1984
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1943 TGATGCTGAGAAATCTAGGCACCGGACTTTTATCACATCAGATATTCGGCTACAAATCAA 2002
Query 1985 CGAAATGAATCAGAAGGTGAAGGAGGAATGGGAGAAGAAACAGGCAGAAGCAGAAAAGCT 2044
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2003 CGAAATGAATCAGAAGGTGAAGGAAGAATGGGAGAAGAAACAGGCTGAAGCAGAAAAGCT 2062
Query 2045 GAAGAAACCGAGTGAGAGTGAAGAAGGTGATGGTGGAGTTGACAGTGAGAAGGAGAAAGA 2104
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2063 TAAGAAACCGAGTGAGAGTGAAGAAGGTGATGGTGGAGTTGACAGTGAGAAGGATAAAGA 2122
Query 2105 AGATAATCGTTCAAAGGGTGTGAAGGTAAATAAAGAAGATGACGACAAAATGAGAACGAC 2164
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 2123 AGATAATCGTTCAAAGGGTGTGAAGGGAAATAAAGAGGATGACGACAAAATGAGAACGAC 2182
Query 2165 GGCTGCAAATGTTGCTGCTCGTGCTGCTGTCGGAGGAGATGATGCGTTCTTGAAATGGCA 2224
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2183 AGCTGCAAATGTTGCTGCTCGTGCTGCTGTCGGAGGAGATGATGCGTTCTTAAAATGGCA 2242
Query 2225 ATTAATGGCTGAAGCTCGTCAGAAATCTGTATCTGAAGCTGGTAAAGATGGGAATCAGAA 2284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2243 ATTAATGGCTGAAGCTCGTCAGAAATCTGTATCTGAAGCTGGTAAAGATGGGAATCAGAA 2302
Query 2285 AACTACTTCAGGTGGAGGAAAGAACTCCAAAGACAGGCAAGATGGTGGACGAAGGTTTTC 2344
||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 2303 AACTACTTCAGGTGGAGGAAAGAACTCCAAAGATAGACAAGATGGTGGACGACGGTTTTC 2362
Query 2345 TGGAACTG 2352
||| ||||
Sbjct 2363 TGGTACTG 2370
Score = 276 bits (149), Expect = 9e-73
Identities = 160/165 (97%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 2352 GGTGGTCGAAGAGTAGGGAAAAACCAAGGTTCGTCGCTTCAACCGAAAGTGGTGAGGACA 2411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2457 GGTGGTCGAAGAGTAGGGAAAAACCAAGGTTCGTCGCTTCAACCGAAAGTGGTGAGGACA 2516
Query 2412 ATCTCTGTGAAGGATGTGGTTGCGGTCCTTGAAAGAGAGCCGCAGATGTCCAAATCCACT 2471
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2517 ATCTCTGTGAAGGATGTGGTTGCGGTCCTCGAAAGAGAGCCACAGATGTCCAAATCCACT 2576
Query 2472 CTAATGTATCGATTAATTCAATAGAAA-ACAGAATCATTATATTT 2515
|| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 2577 CTGATGTATCGATTAATTCAATAGAAAGA-AGAATCATTATATTT 2620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124815354184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5