BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948890
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43080.1 | Symbols: CYCA3;1 | Cyclin A3;1 | chr5:17293227-17... 1591 0.0
> AT5G43080.1 | Symbols: CYCA3;1 | Cyclin A3;1 | chr5:17293227-17294789
FORWARD LENGTH=1068
Length=1068
Score = 1591 bits (861), Expect = 0.0
Identities = 1013/1084 (93%), Gaps = 20/1084 (2%)
Strand=Plus/Plus
Query 25 ATGGCCGACGAAAAGGAGAATTGCGTTAGAATGACAAGAGCAGCGACTAAAAGAAAAGCT 84
|||||||||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||
Sbjct 1 ATGGCCGACGAAAAAGAGAACTGCGTGAGAATGACAAGAGCAGCAACAAAAAGAAAAGCT 60
Query 85 TCAATGGAAGCGACAATAGACGAAGAACGAATCAACAAAAAGAGAGTCGTTCTCGGAGAT 144
|| ||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||
Sbjct 61 TCCATGGAAGCGGCAATAGACAAAGAACGAATCAACAAGAAGAGAGTCGTACTCGGAGAG 120
Query 145 CTTCCAAACTTGTCCAACATCAA-AAAGCCTCGAAAAGCTACAAAGATTCTGACAAAACA 203
||||||||||||||||||||||| ||| |||||||||| | | || ||||||||
Sbjct 121 CTTCCAAACTTGTCCAACATCAAGAAA-TCTCGAAAAGC--C----A--CT-ACAAAACA 170
Query 204 GAAG-A-AAA-CAGTTTCGATTCCGACACTCGTAACCTTAAACTCAGACATTGATACAAG 260
|||| | ||| ||||||||||||||||| ||| ||||||||| ||||||||||| |||||
Sbjct 171 GAAGAAGAAATCAGTTTCGATTCCGACAATCGAAACCTTAAATTCAGACATTGACACAAG 230
Query 261 ATCTGATGATCCTCAGATGTGTGGTCCTTATGTTACTTCAATCTTTGAGTATCTTCGTCA 320
|||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 231 ATCTGATGATCCACAAATGTGTGGTCCTTATGTTACATCAATCTTCGAGTATCTTCGTCA 290
Query 321 ATTAGAGGTGGAAGCAAAATCAAGGCCTTTGGTTGATTATATTGAGAAGATTCAGAAAGA 380
||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 291 ATTAGAGGT------AAAGTCAAGACCTTTGGTTGATTATATAGAGAAGATTCAGAAAGA 344
Query 381 TATAACTTCGAATATGAGAGGAGTTTTGGTTGATTGGTTAGTAGAAGTTGCTGAAGAATA 440
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TGTAACTTCGAATATGAGAGGAGTTTTGGTTGATTGGTTAGTAGAAGTTGCTGAAGAATA 404
Query 441 CAAACTTCTCTCAGACACTCTTTATCTTGCTGTTTCTTACATTGATAGATTCTTGTCTCT 500
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 405 CAAACTTCTCTCAGACACTCTTTACCTCGCTGTTTCTTACATTGATAGATTCTTGTCTCT 464
Query 501 CAAGACTGTTAATAAACAAAAGCTTCAGCTTTTGGGAGTTACTTCAATGCTTATTGCTTC 560
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 465 CAAGACTGTTAATAAACAAAGGCTTCAGCTTTTGGGAGTTACTTCAATGCTTATTGCTTC 524
Query 561 AAAGTATGAAGAGATTACTCCTCCAAATGTGGAAGACTTTTGTTATATTACAGATAATAC 620
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 525 AAAGTATGAAGAGATTACTCCTCCAAATGTGGATGACTTTTGTTATATCACAGACAATAC 584
Query 621 TTACACGAAACATGAGATTGTTAAGATGGAAGCTGATATACTTCTTGCGTTGCGATTTGA 680
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 585 TTACACGAAACAAGAGATTGTTAAGATGGAAGCTGATATACTTCTTGCGTTGCAATTTGA 644
Query 681 ATTAGGAAACCCGACAAGCAACACGTTTCTAAGACGGTTTACAAGGGTTGCACAAGAAGA 740
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 ATTAGGAAACCCTACAAGCAACACGTTTCTAAGACGGTTTACAAGGGTTGCACAAGAAGA 704
Query 741 TTTCGAAATGTCACATTTACAGATGGAGTTTCTTTGTAGCTATCTTTCGGAGTTAAGCAT 800
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 705 TTTCGAAATGTCACATTTACAGATGGAGTTTCTTTGTAGCTATCTTTCGGAGTTGAGCAT 764
Query 801 GTTAGACTATCAATCTGTGAAGTTTCTTCCGTCTATTGTGGCTGCTTCAGCGGTGTTTCT 860
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 765 GTTAGACTATCAATCTGTGAAGTTTCTTCCGTCTACTGTGGCTGCTTCAGCGGTGTTTCT 824
Query 861 CGCTAGGTTTATCATCCGTCCAAAACAACATCCCTGGAATGTGATGTTAGAAGAATACAC 920
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 825 CGCTAGGTTCATCATCCGTCCAAAACAACATCCCTGGAATGTGATGTTGGAAGAATACAC 884
Query 921 AAAATACAAAGCGGGTGATTTAAAAGAATGTGTGGGTATGATACATGACTGGTATCTGAG 980
|| |||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||
Sbjct 885 AAGATACAAAGCGGGTGATTTGAAAGAATGTGTGGCTATGATACATGACTTGTATCTGAG 944
Query 981 CAGAAAAGGAGGAGCTTTACAAGCTATAAGAGATAAGTACAAGCAGCATAAGTTCAAGTG 1040
|||||| | ||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 945 TAGAAAATGTGGAGCTTTAGAAGCTATAAGAGAGAAATACAAGCAGCATAAGTTCAAGTG 1004
Query 1041 TGTGGCCACAATGCCTGTATCGCCAGAGCTGCCTCTTACGCTTTTTGAAGATGTCAACAT 1100
||| || |||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1005 TGTAGCGACAATGCCTGTATCACCAGAGCTGCCTCTTACGGTTTTTGAAGATGTCAACAT 1064
Query 1101 TTAG 1104
||||
Sbjct 1065 TTAG 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55120198410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5