BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948892
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33200.1 | Symbols: | F-box family protein | chr2:14069541-... 784 0.0
> AT2G33200.1 | Symbols: | F-box family protein | chr2:14069541-14070671
FORWARD LENGTH=1131
Length=1131
Score = 784 bits (424), Expect = 0.0
Identities = 910/1135 (80%), Gaps = 71/1135 (6%)
Strand=Plus/Plus
Query 30 GTTCATGATTGGTCAAAGCTTTG-CGACGATCTTTTGCGATCAATCCTCGAAGGCTTGAA 88
||| |||||||||| |||||||| | ||||| ||||||||| || |||||| |||||
Sbjct 14 GTT-ATGATTGGTCCAAGCTTTGTC-ACGATATTTTGCGATTGATACTCGAAAGCTTG-- 69
Query 89 CACTACCAAAGATTTTCATCGAGCGAGTAGTGTTTGCTCAAACTGGTATACCA-TTTCAA 147
||||| ||| |||| ||||||||| || | |||||||| |||||||| | || ||| |
Sbjct 70 CACTA-CAAGGATTATCATCGAGCAAGAACCGTTTGCTCTAACTGGTACA-CAGCTTCCA 127
Query 148 GAACTTGTAAGCGACCTATAAATCTGTTTCCATGGCAAATCCTATTCAA-AGAGAATTCA 206
||| ||||||||||| ||||| |||||||| |||| |||||| | ||| ||||
Sbjct 128 CAACGTGTAAGCGACC------TCTGTATCCATGGCGAATCAAATTCAACA-AGATTTCA 180
Query 207 ACTTTGCTCTTTG-TCCCTGAAGAAAACAAAAAT-CACGAAATTCAACATCCCGGAATCG 264
|||| ||||| | ||| | |||| || || || |||||||||||||||||||||||||
Sbjct 181 ACTTCACTCTTCGATCCAAG-AGAAGAC-AAGATCCACGAAATTCAACATCCCGGAATCG 238
Query 265 ACTTTTCGGATAGGTATGTTCTTACTAGCTGCAGCAATTGGCTCTTGATGATTGATTATA 324
| || || |||||| |||||||| ||||||||||||||||| |||||||| |||||| |
Sbjct 239 AATTCTCCGATAGGAATGTTCTTGCTAGCTGCAGCAATTGGTTCTTGATGGTTGATTCTG 298
Query 325 ATGTAGAtttttttCTCATAAACG-TGTTCACTCGTGAGAGAATCAATCTTCCATCCATA 383
| |||| || | |||| | || | | ||||||||||||||||||||||||||||| ||
Sbjct 299 GTTTAGAATTCTATCTCCTGAATGCT-TTCACTCGTGAGAGAATCAATCTTCCATCGATG 357
Query 384 GAGTCATCGATTATTGGT--------CTTGG----TCAA---GC------ACATTTCGTC 422
|||||||||||| ||||| |||| || || ||||||| ||
Sbjct 358 GAGTCATCGATTCTTGGTAAAGAGAGATTGGAAAAAGAAGTTGCGTGGAAACATTTCATC 417
Query 423 GAGCCTACCGACATAATTTCTGCGAAAAAACAAGCTTGTCTTTGGATAGATGAAACAACA 482
|||| ||| ||||| || ||| | || ||||| ||||||||||||||| |||| | ||||
Sbjct 418 GAGCGTACAGACATCATCTCTACCAAGAAACAGGCTTGTCTTTGGATAAATGAGAGAACA 477
Query 483 AAGGATTATGTTGTTGCTTGGAGTTAT-AACCAATACCACTTATTCA-TAAACAAGAAAG 540
|||||||||||| |||||||| ||| || || || | || |||| | |||||||||
Sbjct 478 GGGGATTATGTTGTGGCTTGGAG-TATCAAACAGCACTATTTGTTCACT-TACAAGAAAG 535
Query 541 GAGATGATTCATGGTCGAGTCTTGAAGACACAAAGTGTGTGTATATTGC-TTGTAATAAA 599
||||||||||||||| || |||||||| ||| |||||||||| ||| || ||| |||||
Sbjct 536 GAGATGATTCATGGTTGAATCTTGAAGGCACTAAGTGTGTGTCTATGGCTTTG-AATAAG 594
Query 600 GACTACAAGCTTTATGTGTATACATTATATAGTTGCATCAAGATTTTTGATATATCTAGT 659
||||||||||||||||||||| ||||| ||| | |||||||||||||||| ||| | ||
Sbjct 595 GACTACAAGCTTTATGTGTATGCATTAGATAACTCCATCAAGATTTTTGATTTATATGGT 654
Query 660 GA-TTCCCCTGA-AGAGATTGTCGAAGAAAACCCGTACCGTAACCATCCGTTTCGCTTTC 717
|| || ||| | ||||||||||| || || ||||| || |||||||||||| ||||||
Sbjct 655 GAGTT-TCCT-AGTGAGATTGTCGAGGAGAATCCGTATCGCAACCATCCGTTTAGCTTTC 712
Query 718 GCCAATT-TTCCCAA-CCTTG-GGAACATTATTGGAAGCAGAG-AGTGGCGGTTACTAGC 773
| || || | || || | |||||| |||||||||| | || ||| |||||| |
Sbjct 713 G--GTTTGTTTCGAAGCC-CGAGGAACACGCTTGGAAGCAG-GTTGTAGCGATTACTAAC 768
Query 774 TTTGGAGAGGTTTTGATGATCGTGAGCTTGAAAGGGTTGGAAAATAAACGTTTGTTTTAT 833
| ||||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||||
Sbjct 769 TCTGGAGAGGTTTTGATGATCGTGAGCTTAAAAGGGTTAGAAGATAAGCGTTTGTTTTAT 828
Query 834 ATCTATAAGAT-GAATTTGGAGAAAAGTAATTGGGAAAGAGTAGATTCTCTTGGAGGTGA 892
|| |||||||| || |||||| | |||| ||||| |||||||||||||||||||||||
Sbjct 829 ATATATAAGATGGATTTTGGA-AGTTGTAACTGGGAGAGAGTAGATTCTCTTGGAGGTGA 887
Query 893 GATGTTGATATTTGGTCATGGGGTCACGATTAGAGCACCAATGAAAGATATTAGTAGTTT 952
|||||||||||||||||||||||| || || |||||||| || |||||||| | ||||
Sbjct 888 GATGTTGATATTTGGTCATGGGGTTACCATAAGAGCACCGATCTTAGATATTAATGGTTT 947
Query 953 GGGAATCAAGAGTGATTCAAtttttttCTC-CGGTGAAGATCTCTGGCCAGGAAGTTATC 1011
||||||||||||||||||||| | |||| | |||||| ||||| |||||| ||| | |
Sbjct 948 GGGAATCAAGAGTGATTCAATCTGTTTC-CGCGGTGATGATCTTTGGCCACTTAGTCAGC 1006
Query 1012 CGTATAATCCCAACACACAACTTTAT-TGCGGTGTGTTCGATCTTACGACAAGTACAATC 1070
| || ||||| |||||||| | || |||||||| || |||||| ||||||||||||||
Sbjct 1007 TTTTTATTCCCATCACACAACCT-ATGTGCGGTGTATTTGATCTTGCGACAAGTACAATC 1065
Query 1071 ACATGGTCTAAACCATTAGATGTTTC-GTTCTTGAAGA-TATCGTGGTTCGTTCC 1123
|||||| ||||| ||||||||| ||| || |||||||| | || ||||| |||||
Sbjct 1066 ACATGGCCTAAATCATTAGATGCTTCAGT-CTTGAAGAGTTTC-TGGTTTGTTCC 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56576014215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5