BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948901
Length=268
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43066.1 | Symbols: | unknown protein; LOCATED IN: endomemb... 361 2e-99
> AT5G43066.1 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; Has 30201 Blast hits to 17322 proteins in 780
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink). | chr5:17284583-17284807 FORWARD LENGTH=225
Length=225
Score = 361 bits (195), Expect = 2e-99
Identities = 216/226 (96%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 22 ATGGAGAAAAAGAATATGTTCGTGCTGTGTATGATCTTGTTATTGGTGGGCTCGTCGTTG 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAAAAGAATATGTTCGTGCTGTGTATGATCTTGTTATTGGTGGGCTCGTCGTTG 60
Query 82 ATGTTTGAGAGAGTTGATTGCAGAGTAGTACGATCGGAGCCGTTCAGAGATATCAACGGC 141
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 61 ATGTTTGAGAGAGTTGATTGCAGAGTCGTACGATCGGAGCCTTTCAGAGATATCAACGGC 120
Query 142 CATGGTCAATCGACGGCGACCAAGGTGAAGAGAAGCTCGTGCAGTCGACGTCCTTTGATG 201
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATGATCAATCAACGGCGACCAAGGTGAAGAGAAGCTCGTGCAGTCGACGTCCTTTGATG 180
Query 202 AGGAT-CTTAGCGTCAGGACCGGGCAGAAGAGGACGTGGTCACTGA 246
||||| || |||||| |||||| || |||||||||||||||||||
Sbjct 181 AGGATTCT-AGCGTCTGGACCGAACAAAAGAGGACGTGGTCACTGA 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12265330756
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5