BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948902

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43065.1 | Symbols:  | transposable element gene | chr5:1727...   183    5e-46


> AT5G43065.1 | Symbols:  | transposable element gene | chr5:17278182-17282396 
FORWARD LENGTH=4215
Length=4215

 Score =  183 bits (99),  Expect = 5e-46
 Identities = 122/133 (92%), Gaps = 1/133 (1%)
 Strand=Plus/Plus

Query  13    TTATTAAAATGGAGAACAAGAATGTGTTTGTGCTGTGTATGATCTTATTATTGGTGAGCT  72
             ||| |||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct  4084  TTA-TAAAATGGAGAACAAGAATGTGTTTGTGTTGTGTGTGATCTTATTTTTGGTGAGCT  4142

Query  73    CATCGTTGATGTTTGAGAGAGGTCATTGCAGAGCTCTACGATCCAAACCGTTCAGAGATA  132
             | ||||||||||||||| | |||||||||||| |||||||||| || |||||||||||||
Sbjct  4143  CGTCGTTGATGTTTGAGGGTGGTCATTGCAGAACTCTACGATCGAAGCCGTTCAGAGATA  4202

Query  133   CCAACGACCATGA  145
             |||||| ||||||
Sbjct  4203  CCAACGGCCATGA  4215



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11863188764


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5