BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948904
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43060.1 | Symbols: | Granulin repeat cysteine protease fam... 2254 0.0
> AT5G43060.1 | Symbols: | Granulin repeat cysteine protease family
protein | chr5:17269507-17272164 REVERSE LENGTH=1716
Length=1716
Score = 2254 bits (1220), Expect = 0.0
Identities = 1364/1435 (95%), Gaps = 3/1435 (0%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTCAAACAAAAAATGGGTTTCTTAAAGTTATCTCCGATGATCCTTCTCCTAT 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 28 TCTTCTTCTTCAAACAAAAAATGGGTTTCTTAAAGTTATCTCCAATGATCCTTCTCCTAG 87
Query 61 CAATGATCGGCGTTTCATATGCCATCGACATGTCAATCATCTCCTACGACGAAAACCACC 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 88 CAATGATCGGCGTTTCATATGCCATGGACATGTCAATCATCTCCTACGACGAAAACCACC 147
Query 121 ACATCTCCACCGTGTCAAGCCGTAGCGACGCGGAGGTTGAGAGAATCTACGAGGCGTGGA 180
||||| |||||| | | |||||||||||| |||||||||||||||||||||| |||||||
Sbjct 148 ACATCACCACCGAGACCAGCCGTAGCGACTCGGAGGTTGAGAGAATCTACGAAGCGTGGA 207
Query 181 TGGTGGAACACGGGAAGAAGAAGATGAACCAAAACGGTCTTGGTGCAGAGAAGGATCAGA 240
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 208 TGGTGGAACACGGGAAGAAGAAGATGAATCAAAACGGTCTTGGTGCAGAGAAAGATCAAA 267
Query 241 GGTTTGAGATCTTTAAAGATAATCTTCGTTTCATCGATGAACATAACACCAAAAACCTCA 300
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GATTCGAGATCTTTAAAGATAATCTTCGTTTCATCGATGAACATAACACCAAAAACCTCA 327
Query 301 GTTATAAACTTGGTTTAACCCGGTTTGCTGATTTAACCAATGATGAGTACCGATCTATGT 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 328 GTTATAAACTTGGTTTAACCCGGTTTGCTGATTTAACCAATGAGGAGTACCGATCTATGT 387
Query 361 ACCTTGGTGCTAAACCGGTGAAGAGAGTTTTGAAAACCAGTGATCGGTATGAGGCGCGTG 420
||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||
Sbjct 388 ACCTTGGTGCTAAACCGACCAAGAGGGTTTTGAAAACCAGTGATCGGTATCAGGCGCGTG 447
Query 421 TTGGTGACGCACTTCCTGATTCCGTTGACTGGAGGAAAGAAGGTGCCGTCGCCGATGTTA 480
|||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 448 TTGGTGACGCGCTTCCTGATTCGGTTGACTGGAGAAAAGAAGGTGCCGTCGCTGATGTTA 507
Query 481 AAGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTTTCATCTATTGGTGCAGTGGAAGGAA 540
|||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||
Sbjct 508 AAGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCAACTATTGGAGCAGTGGAAGGAA 567
Query 541 TAAACAAGATTGTGACTGGAGATTTAATTTCGTTGTCTGAACAAGAATTGGTTGATTGTG 600
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 568 TAAACAAGATTGTGACAGGAGATTTAATATCTTTGTCTGAACAAGAATTGGTTGATTGTG 627
Query 601 ACACATCTTATAACCAAGGTTGTAATGGTGGTTTGATGGATTATGCGTTTGAGTTTATTA 660
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 628 ACACATCTTATAACCAAGGATGTAATGGTGGTTTAATGGACTATGCGTTTGAGTTTATTA 687
Query 661 TAAAAAATGGCGGTATCGATACCGAAGCGGATTATCCATACAAGGCTGCTGATGGTCGTT 720
| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 688 TCAAAAATGGTGGTATTGATACCGAAGCGGATTATCCTTACAAGGCTGCTGATGGTCGTT 747
Query 721 GTGACCAGAACAGGAAAAATGCTAAGGTTGTTACCATTGATTCGTATGAAGATGTGCCTG 780
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 748 GTGACCAGAACAGGAAAAATGCTAAGGTTGTTACCATTGATTCATATGAAGATGTCCCTG 807
Query 781 AGAACAGCGAGGCGTCTCTAAAGAAAGCTTTGGCTCACCAGCCCGTTAGTGTCGCCATTG 840
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 808 AGAACAGCGAGGCGTCTCTAAAGAAAGCTTTGGCTCACCAGCCTATTAGTGTCGCCATTG 867
Query 841 AAGCTGGTGGTCGCGCTTTTCAGCTCTATTCTTCGGGTGTGTTTGATGGAATCTGTGGGA 900
|||| |||||||||||||| |||||||||||||||||||| ||||||||| | |||||||
Sbjct 868 AAGCGGGTGGTCGCGCTTTCCAGCTCTATTCTTCGGGTGTATTTGATGGACTTTGTGGGA 927
Query 901 CGGAGTTAGACCACGGTGTTGTAGCTGTGGGTTACGGAACTGAGAACGGAAAGGACTACT 960
|||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 928 CGGAGTTAGACCACGGTGTTGTGGCTGTGGGTTATGGAACCGAGAACGGAAAGGACTACT 987
Query 961 GGATTGTGAGAAACTCATGGGGAAACAGATGGGGAGAGAGCGGATACCTAAAGATGGCAC 1020
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 988 GGATTGTGAGAAACTCATGGGGAAACAGATGGGGAGAGAGCGGATACATAAAGATGGCAC 1047
Query 1021 GTAACATTGCAGAGCCAACAGGAAAGTGTGGAATAGCGATGGAGGCTTCGTATCCGATCA 1080
||||||||| || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1048 GTAACATTGAAGCGCCAACAGGAAAGTGTGGAATCGCTATGGAGGCTTCGTATCCGATCA 1107
Query 1081 AGAAAGGTCAGAACCCACCAAACCCTGGCCCGTCACCGCCATCTCCCATTAAGCCACCAA 1140
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1108 AGAAAGGTCAGAACCCACCAAACCCTGGCCCGTCACCACCATCTCCCATTAAGCCACCAA 1167
Query 1141 CCACGTGTGACAAATATTTCTCTTGCCCTGAGAGCAACACTTGTTGTTGTCTCTACAAGT 1200
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 CCACATGTGACAAGTACTTCTCTTGCCCTGAGAGCAACACTTGTTGTTGTCTCTACAAGT 1227
Query 1201 ATGGTAAGTACTGCTTCGGTTGGGGATGTTGCCCGCTCGAATCTGCTACTTGCTGCGATG 1260
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1228 ATGGTAAGTACTGCTTCGGATGGGGATGTTGCCCGCTCGAAGCTGCTACTTGCTGCGATG 1287
Query 1261 ATCACTCAAGTTGCTGTCCTCATGAGTACCCGGTTTGCGACATTAACCGCGGAACCTGTT 1320
|| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1288 ATAACTCAAGTTGCTGTCCTCATGAGTACCCGGTTTGTGACGTTAACCGCGGAACCTGTT 1347
Query 1321 TGATGAGCAAGAACAGTCCATTGAGCGTGAAGGCTCTCAAGCGTACACCCGCAATACCGT 1380
||||||||||||||||||| || |||||||||||| | ||||||||||||||||||||||
Sbjct 1348 TGATGAGCAAGAACAGTCCGTTTAGCGTGAAGGCTTTAAAGCGTACACCCGCAATACCGT 1407
Query 1381 TCTGGGCAAAGAGCAGAAAGCACATTGCGTAAGA-GAAGGAAGG-AAAAACATTG 1433
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 1408 TCTGGGCAAAGAGCAGAAAGCACATTGCGTAAGAAGA-GGAAGACAAAAACATTG 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70632166815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5