BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948905
Length=523
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43050.1 | Symbols: NPQ6 | Protein of unknown function (DUF5... 704 0.0
> AT5G43050.1 | Symbols: NPQ6 | Protein of unknown function (DUF565)
| chr5:17268025-17269024 FORWARD LENGTH=696
Length=696
Score = 704 bits (381), Expect = 0.0
Identities = 455/490 (93%), Gaps = 7/490 (1%)
Strand=Plus/Plus
Query 19 GGATGGCACATTCTTTGAGTTTCATTTCGACCAACTTGAACAGTGTAGTTCTTAATCATC 78
||||||||||||||||||||||||| || ||||||||||||||| |||| ||||| | |
Sbjct 74 GGATGGCACATTCTTTGAGTTTCATCTCCACCAACTTGAACAGTTTAGTCCTTAA-C--C 130
Query 79 ATCATCAGTGGAC-GAGTTACGGAAC-TTTGGTGTCGTCGCCATTTAAACCTAAGAGGAG 136
||||||||| | | ||||| |||||| ||| ||||||||||||||||||| ||||||||
Sbjct 131 ATCATCAGT-GCCAGAGTTTCGGAACGTTT-GTGTCGTCGCCATTTAAACGAAAGAGGAG 188
Query 137 ATTTTCAAGAAGCATTAGAGCTTTGCAAGAGACTGAAGGTCCAACTCCAAGAAGATTGAT 196
|||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 189 ATTTGCAAGAAGCATTAGAGCTTTACAAGAGACTGAAGGTCCAACGCCAAGAAGATTGAT 248
Query 197 AGACATTATAAGATCTGTTCCTGAAATCTCTAGGAATTACTTCAAGAAGCCTTCAAGAAG 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 AGACATTATAAGATCTGTTCCTGAAATCTCTAGGAATTACTTCAAGAAGCCTTCAAGAAG 308
Query 257 AACGCTTTTCGGAGGAATCTCGTTGTTAGGTGGGTTTTATGTCGCGCAGACTATCTCTCT 316
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 309 AACGCTTTTTGGAGGAATCTCGTTGTTAGGTGGCTTTTATGTCGCGCAGACTATCTCTCT 368
Query 317 GTCGTTTGGAGCTTTGGGAGTGAACGATGTTATCGCTGCGGTTTTATGTGTTCTTTTGAC 376
||||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 369 CTCGTTTGGAGCATTGGGAGTGAACGATGTTATTGCTGCGGTTCTATGCGTTCTTTTGAC 428
Query 377 AGAGTATGTGACTAGATTCTACTATAGCCGTACCATGGTCACATTTCCGATTGCTCTGCT 436
|||||||||||| |||||||| |||||||| |||| ||||||||||| |||||||||||
Sbjct 429 AGAGTATGTGACAAGATTCTATTATAGCCGCACCACAGTCACATTTCCTATTGCTCTGCT 488
Query 437 TAATAATTTCAAGATGGGTTTCACTTATGGTCTCTTCATTGACGCATTCAAGCTAGCTAG 496
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 489 CAATAATTTCAAGATGGGTTTCACTTATGGTCTCTTCATTGACGCCTTCAAGCTGGCTAG 548
Query 497 CTAAGTGTTT 506
|||| |||||
Sbjct 549 CTAACTGTTT 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25016605206
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5