BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948906

Length=560
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71190.1 | Symbols: SAG18 | senescence associated gene 18 | ...   353    8e-97
  AT3G13970.1 | Symbols: APG12, APG12B | Ubiquitin-like superfami...  76.8    2e-13


> AT1G71190.1 | Symbols: SAG18 | senescence associated gene 18 
| chr1:26833406-26835032 REVERSE LENGTH=1087
Length=1087

 Score =  353 bits (191),  Expect = 8e-97
 Identities = 214/225 (95%), Gaps = 2/225 (1%)
 Strand=Plus/Plus

Query  110  GGATTCCAAAATTTTTAAACGTCATCTCCAAATTCCCTTTCCTCATCATCAGCCTTATTG  169
            |||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct  178  GGATTCCAAATTTTTTAAACGTCATCTCCAACTTCCCTTTCCTCATCATCGGCCTTATTG  237

Query  170  GTCTCATCCTCTGCTTTTACCCAGAAGATTACTTCAGCTTTAGTTTGCGAGGTGAGAAAA  229
            |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  238  GTCTTATCCTCTGCTTTTACCCAGAAGATTACTTTAGCTTTAGTTTGCGAGGTGAGAAAA  297

Query  230  TAGGATGGACTTGCTTTTACATCGGTGT-GACTGCTGTTGCTTTTGGATCGTCTTACTAT  288
            |||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||
Sbjct  298  TAGGATGGACTTGCTTTTACATCGGTGTAG-CTGCTGTTGCTTTTGGATCTTCTTACTAT  356

Query  289  CATCTTCACCCAAATGATGCTGCTCTCCTCTGGGATCCTCTTCCC  333
            |||||||||||||| |||||| ||||||||||||||| |||||||
Sbjct  357  CATCTTCACCCAAACGATGCTACTCTCCTCTGGGATCGTCTTCCC  401


> AT3G13970.1 | Symbols: APG12, APG12B | Ubiquitin-like superfamily 
protein | chr3:4613506-4614848 REVERSE LENGTH=529
Length=529

 Score = 76.8 bits (41),  Expect = 2e-13
 Identities = 51/55 (93%), Gaps = 3/55 (5%)
 Strand=Plus/Plus

Query  483  AACTTTGGGTTTGATGGTAAACTGGTGGTTAATTACTATGCTTGTTCCATGGCAT  537
            |||||||||||||||||||||||||||| | |  |||||||||||||||||||||
Sbjct  280  AACTTTGGGTTTGATGGTAAACTGGTGG-TGA--ACTATGCTTGTTCCATGGCAT  331



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26875268645


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5