BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948914
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42970.1 | Symbols: COP8, FUS4, EMB134, COP14, CSN4, FUS8, A... 1984 0.0
> AT5G42970.1 | Symbols: COP8, FUS4, EMB134, COP14, CSN4, FUS8,
ATS4 | Proteasome component (PCI) domain protein | chr5:17237165-17240733
REVERSE LENGTH=1583
Length=1583
Score = 1984 bits (1074), Expect = 0.0
Identities = 1182/1235 (96%), Gaps = 4/1235 (0%)
Strand=Plus/Plus
Query 2 AAATCTCCGAAAGAGAAGCCATGGATGAAGCTTTGACGAACGCTTCTGCAATCGGTGACC 61
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 AAATCTCAG-AAGAGAAGCCATGGATGAAGCTTTGACGAACGCTTCTGCAATCGGTGACC 124
Query 62 AACGCCAGAAAATCGAACAGTACAAACTCATCCTCTCCTCTGTTCTTTCTTCCAACGATC 121
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 125 AACGCCAGAAAATCGAACAGTACAAACTCATCCTCTCCTCTGTTCTCTCTTCCAACGATC 184
Query 122 TTCTCCAAGCGCAGAGATTCATCGATCACATTCTTTCCGATGATGTCCCGTTGGTGGTTT 181
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TTCTCCAAGCTCAGAGATTCATCGATCACATTCTTTCCGATGATGTCCCGTTGGTGGTTT 244
Query 182 CGAGGCAGCTTTTGCAATCGTTCGCACAAGAGCTTGGGAGATTAGAACCGGAGACGCAGA 241
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 245 CGAGGCAGCTTTTGCAGTCTTTCGCACAAGAGCTTGGGAGATTAGAACCGGAGACGCAGA 304
Query 242 AGGAGGTTGCTCAGTTTACT-TTAACCCAGATTCAGCCTAGAGGTGTTTCCTTTGAGGAA 300
||||| ||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||
Sbjct 305 AGGAGATTGCTCAATTTACTCTTA-CCCAGATTCAGCCTAGAGTTGTTTCCTTTGAGGAA 363
Query 301 CAGGCACTTATTATCAGAGAAAAACTTGCCGGTTTGTATGAATCGGAGCAGGAATGGTCT 360
||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 364 CAGGCACTTGTTATCAGAGAAAAACTTGCGGGTTTGTATGAATCAGAGCAGGAATGGTCA 423
Query 361 AAAGCGGCGGAGATGTTGAGTGGCATTGATTTGGATTCTCCAATGAGGGCCGTTGACGAC 420
||||| || ||||||||||||| |||||| |||||||| |||||||||||||||||||
Sbjct 424 AAAGCAGCACAGATGTTGAGTGGAATTGATCTGGATTCTGGAATGAGGGCCGTTGACGAC 483
Query 421 AATTTCAAGCTTTCAAAGTGTATTCAAATTGCTCGTTTGTATCTCGAGGATGATGATGCT 480
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 484 AACTTCAAGCTTTCAAAGTGTATCCAAATTGCTCGTTTGTATCTCGAGGATGATGATGCT 543
Query 481 GTAAAAGCAGAGGCTTTCATAAATAAAGCTTCTTTCTTAGTGAGCAGTAGTCAGAATGAA 540
||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 544 GTAAATGCAGAGGCTTTTATAAATAAAGCTTCTTTCTTAGTGAGCAATAGTCAGAATGAA 603
Query 541 GTTTTGAATTTGCAGTACAAGGTCTGCTATGCTAGAATTTTGGATATGAAACGAAAGTTT 600
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 604 GTTTTGAATTTGCAGTACAAGGTCTGCTATGCTAGAATTTTGGACATGAAAAGAAAGTTT 663
Query 601 TTAGAGGCTGCACTTCGGTATTACGGCATATCTCAGATTGAGAAACGCCAAATAGGGGAT 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 664 TTAGAGGCTGCACTTCGGTATTACGGCATATCTCAGATTGAGCAACGCCAAATAGGGGAT 723
Query 661 GAAGAGATTGATGAGAATGCTTTAGAGCAAGCCCTATCCGCTGCTGTCACATGTACCATA 720
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 724 GAAGAGATTGATGAGAATGCTTTAGAGCAGGCCCTATCAGCTGCTGTCACATGTACCATA 783
Query 721 TTAGCTGGAGCCGGTCCTCAGCGATCTCGTGTCCTTGCAACTTTATACAAAGATGAGCGT 780
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 784 TTAGCTGGAGCTGGTCCTCAGCGTTCTCGTGTTCTTGCAACTTTATACAAAGATGAGCGT 843
Query 781 TGCTCCAAGCTGAAGATTTATCCTATCCTGCAGAAGGTGTATCTGGAAAGAATTTTAAGG 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 844 TGCTCCAAGCTGAAGATTTATCCTATCCTGCAGAAGGTGTATCTGGAAAGGATTTTAAGG 903
Query 841 AGACCAGAGATTGATGCTTTTTCAGAAGAACTAAGGCCACATCAGAAAGCATCTTTGCCT 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 AGACCAGAGATTGATGCCTTTTCAGAAGAACTAAGGCCACATCAGAAAGCATCTTTGCCT 963
Query 901 GACAAATCCACTGTTCTAGACCGTGCTATGATTGAGCATAACCTTCTAAGTGCAAGCAAA 960
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 964 GACAAATCCACTGTTCTTGACCGTGCTATGATTGAGCATAACCTTCTTAGTGCAAGCAAA 1023
Query 961 CTCTACACAAACATAAGGTTTGATGAATTGGGAACTCTGCTGGGGATTGATCCAAGAAAG 1020
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1024 CTCTACACAAACATAAGGTTTGATGAATTGGGAACTCTGTTGGCGATTGATCCAAGAAAA 1083
Query 1021 GCGGAGAAGATAGCAGCTAATATGATTGGGCAAGACAGAATGAGGGGTTCCATAGATCAG 1080
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1084 GCGGAGAAGATAGCAGCTAATATGATTGGGCAAGACCGAATGAGGGGTTCCATAGATCAG 1143
Query 1081 GAGGAGGCTGTGATACATTTTGAGGATGACATTGAGGAACTACAACAATGGGATCAACAG 1140
|||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1144 GAGGAGGCTGTGATTCATTTTGAGGATGACGTGGAGGAACTACAACAATGGGATCAACAG 1203
Query 1141 ATATCTGGATTGTGCCAAGCTCTCAATGACATTCTGGATGGGATGGCCAAGAAAGGCTTG 1200
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1204 ATATCGGGATTATGCCAAGCTCTCAATGACATTCTGGATGGGATGGCCAAGAAAGGCATG 1263
Query 1201 CCTGTTCCTGTCTGATTGATTCC-AAGCTGTGAGA 1234
|||||||||||||||||| ||| |||| ||||||
Sbjct 1264 TCTGTTCCTGTCTGATTGACTCCCAAGCCGTGAGA 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60692458905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5