BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948922
Length=214
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42567.1 | Symbols: | Protein of unknown function (DUF784) ... 263 5e-70
AT5G42565.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 252 1e-66
AT1G45215.1 | Symbols: | Protein of unknown function (DUF784) ... 191 2e-48
AT1G45221.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 191 2e-48
AT1G45223.1 | Symbols: | Protein of unknown function (DUF784) ... 189 9e-48
AT1G57760.1 | Symbols: | Protein of unknown function (DUF784) ... 187 3e-47
AT1G57775.1 | Symbols: | Protein of unknown function (DUF784) ... 178 2e-44
AT1G57777.1 | Symbols: | Protein of unknown function (DUF784) ... 176 7e-44
AT1G45211.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 159 7e-39
> AT5G42567.1 | Symbols: | Protein of unknown function (DUF784)
| chr5:17018059-17018406 REVERSE LENGTH=348
Length=348
Score = 263 bits (142), Expect = 5e-70
Identities = 178/195 (91%), Gaps = 3/195 (2%)
Strand=Plus/Plus
Query 21 ATGTCTAAATTTAGCTCTCAAATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGTG 80
||||||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||| |
Sbjct 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
Query 81 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 140
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
Query 141 GTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCTGGTGTTGTCTTTGAAAATGGAAC 200
|| |||||||||||||||||||||||||||||| || | || |||||||||||||||||
Sbjct 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTC-GCTGCTGTCTTTGAAAATGGAAA 179
Query 201 CAT-CTCTGATCCTT 214
||| | |||||||||
Sbjct 180 CATGC-CTGATCCTT 193
> AT5G42565.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr5:17020007-17020354 REVERSE
LENGTH=348
Length=348
Score = 252 bits (136), Expect = 1e-66
Identities = 177/196 (90%), Gaps = 5/196 (3%)
Strand=Plus/Plus
Query 21 ATGTCTAAATTTAGCTCTCAAATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGTG 80
||||||||||||| ||||| ||||||| | ||||||| ||||||||||||||||||| |
Sbjct 1 ATGTCTAAATTTAATTCTCAGATTACTATGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
Query 81 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 140
|||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 61 TTTGTTCCGGCTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
Query 141 -GTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCTGGTGTTGTCTTTGAAAATGGAA 199
|| ||||||||||||||||||||||||||||| || | || |||||||||||||||||
Sbjct 121 GGT-TAAATCACTCCTAAGTGTGCGTTGGATATAGTC-GCTGCTGTCTTTGAAAATGGAA 178
Query 200 CCAT-CTCTGATCCTT 214
|||| | |||||||||
Sbjct 179 CCATGC-CTGATCCTT 193
> AT1G45215.1 | Symbols: | Protein of unknown function (DUF784)
| chr1:17137703-17138231 FORWARD LENGTH=529
Length=529
Score = 191 bits (103), Expect = 2e-48
Identities = 157/183 (86%), Gaps = 3/183 (2%)
Strand=Plus/Plus
Query 20 TATGTCTAAATTTAGCTCTCAAATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGT 79
|||| ||| || ||||| || ||| | |||||||||| |||||||||||||||||||
Sbjct 84 TATGGCTAGGTTAAGCTCCCATGTTATTGCGCTATTCATTGTTGTAGCTTTGGTGTGTGC 143
Query 80 GTTTGTTCCGGT-TTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTC 138
||||||||| || ||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 144 GTTTGTTCCTGTATTT-TCTGTCGAAGAAGCTGAAGCAAAATCATTATGGAACACTTGTC 202
Query 139 TTGTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCTGGTGTTGTCTTTGAAAATGGA 198
| || |||||||||||||| ||||| ||| ||||||| | |||||| |||| |||||||
Sbjct 203 TAGTTAAAATCACTCCTAAATGTGCATTGAATATAATTTA-TGTTGTTTTTGGAAATGGA 261
Query 199 ACC 201
|||
Sbjct 262 ACC 264
> AT1G45221.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr1:17139448-17140012
FORWARD LENGTH=565
Length=565
Score = 191 bits (103), Expect = 2e-48
Identities = 157/183 (86%), Gaps = 3/183 (2%)
Strand=Plus/Plus
Query 20 TATGTCTAAATTTAGCTCTCAAATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGT 79
|||| ||| || ||||| || ||| | |||||||||| |||||||||||||||||||
Sbjct 84 TATGGCTAGGTTAAGCTCCCATGTTATTGCGCTATTCATTGTTGTAGCTTTGGTGTGTGC 143
Query 80 GTTTGTTCCGGT-TTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTC 138
||||||||| || ||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 144 GTTTGTTCCTGTATTT-TCTGTCGAAGAAGCTGAAGCAAAATCATTATGGAACACTTGTC 202
Query 139 TTGTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCTGGTGTTGTCTTTGAAAATGGA 198
| || |||||||||||||| ||||| ||| ||||||| | |||||| |||| |||||||
Sbjct 203 TAGTTAAAATCACTCCTAAATGTGCATTGAATATAATTTA-TGTTGTTTTTGGAAATGGA 261
Query 199 ACC 201
|||
Sbjct 262 ACC 264
> AT1G45223.1 | Symbols: | Protein of unknown function (DUF784)
| chr1:17141192-17141771 FORWARD LENGTH=580
Length=580
Score = 189 bits (102), Expect = 9e-48
Identities = 148/170 (87%), Gaps = 3/170 (2%)
Strand=Plus/Plus
Query 33 AGCTCTCAAATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGTGTTTGTTCCGGT- 91
||||| || ||| | |||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 93 AGCTCCCATGTTATTGCGCTATTCATTGTTGTAGCTTTGGTGTGTGCGTTTGTTCCTGTA 152
Query 92 TTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTTGTAAAAATCAC 151
||| || |||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 153 TTT-TCTGTCGAAGAAGCTGAAGCAAAATCATTATGGAACACTTGTCTAGTTAAAATCAC 211
Query 152 TCCTAAGTGTGCGTTGGATATAATCTGGTGTTGTCTTTGAAAATGGAACC 201
|||||| ||||| ||| ||||||| | |||||| |||| ||||||||||
Sbjct 212 TCCTAAATGTGCATTGAATATAATTTA-TGTTGTTTTTGGAAATGGAACC 260
> AT1G57760.1 | Symbols: | Protein of unknown function (DUF784)
| chr1:21390003-21390565 FORWARD LENGTH=563
Length=563
Score = 187 bits (101), Expect = 3e-47
Identities = 158/185 (85%), Gaps = 5/185 (3%)
Strand=Plus/Plus
Query 19 ATATGTCTAAATTTAGCTCTCAAATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTG 78
||||| ||||| | ||||| || ||||| |||||||||| |||| | ||||||||||||
Sbjct 78 ATATGGCTAAACTAAGCTCCCATGTTACTGCGCTATTCATTGTTGCAACTTTGGTGTGTG 137
Query 79 TGTTTGTTCCGGT--TTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTG 136
|||| |||| || ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 138 CGTTTATTCCTGTAATTTCT--GTCGAAGAAGCTGAAGCAAAATCATTATGGAACACTTG 195
Query 137 TCTTGTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCTGGTGTTGTCTTTGAAAATG 196
||| || |||||||||||||| ||||| ||| ||||||||| |||||| |||| |||||
Sbjct 196 TCTCGTTAAAATCACTCCTAAATGTGCATTGAATATAATCTA-TGTTGTTTTTGGAAATG 254
Query 197 GAACC 201
|||||
Sbjct 255 GAACC 259
> AT1G57775.1 | Symbols: | Protein of unknown function (DUF784)
| chr1:21399618-21400068 REVERSE LENGTH=451
Length=451
Score = 178 bits (96), Expect = 2e-44
Identities = 155/183 (85%), Gaps = 5/183 (3%)
Strand=Plus/Plus
Query 21 ATGTCTAAATTTAGCTCTCAAATTACTA-CGCTATTCATCGTTGTAGCTTTGGTGTGTGT 79
||| ||||| | |||||||| |||| | || ||||||| ||||||||||| |||||||
Sbjct 1 ATGGCTAAACTAAGCTCTCATGTTAC-AGCGTTATTCATTGTTGTAGCTTTAGTGTGTGC 59
Query 80 GTTTGTTCCGGT-TTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTC 138
|||| ||| || ||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 60 GTTTAATCCTGTATTT-TCTGTCGAAGAAGCTGAAGCAAAATCATTATGGAACACTTGTC 118
Query 139 TTGTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCTGGTGTTGTCTTTGAAAATGGA 198
| || |||||||||||||| ||||| ||| ||||||||| ||| || |||| |||||||
Sbjct 119 TCGTTAAAATCACTCCTAAATGTGCATTGAATATAATCTA-TGTAGTTTTTGGAAATGGA 177
Query 199 ACC 201
|||
Sbjct 178 ACC 180
> AT1G57777.1 | Symbols: | Protein of unknown function (DUF784)
| chr1:21401235-21401798 REVERSE LENGTH=564
Length=564
Score = 176 bits (95), Expect = 7e-44
Identities = 156/185 (84%), Gaps = 5/185 (3%)
Strand=Plus/Plus
Query 19 ATATGTCTAAATTTAGCTCTCAAATTACTA-CGCTATTCATCGTTGTAGCTTTGGTGTGT 77
||||| ||||| | |||||||| |||| | || ||||||| ||||||||||| ||||||
Sbjct 81 ATATGGCTAAACTAAGCTCTCATGTTAC-AGCGTTATTCATTGTTGTAGCTTTAGTGTGT 139
Query 78 GTGTTTGTTCCGGT-TTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTG 136
| |||| ||| || ||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 140 GCGTTTAATCCTGTATTT-TCTGTCGAAGAAGCTGAAGCAAAATCATTATGGAACACTTG 198
Query 137 TCTTGTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCTGGTGTTGTCTTTGAAAATG 196
||| || |||||||||||||| ||||| || ||||||||| ||| || |||| |||||
Sbjct 199 TCTCGTTAAAATCACTCCTAAATGTGCACTGAATATAATCTA-TGTAGTTTTTGGAAATG 257
Query 197 GAACC 201
|||||
Sbjct 258 GAACC 262
> AT1G45211.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein [pseudogene] | chr1:17136065-17136392 FORWARD
LENGTH=328
Length=328
Score = 159 bits (86), Expect = 7e-39
Identities = 133/155 (86%), Gaps = 6/155 (4%)
Strand=Plus/Plus
Query 49 CGCTATTCATC-GTTGTAGCTTTGGTGTGTGTGTTTGTTCCGGT-TTTCTCAGTCGAAGA 106
||||||||| | ||||||||||||||||||| ||||||||| || ||| | ||||||||
Sbjct 10 CGCTATTCA-CTGTTGTAGCTTTGGTGTGTGCGTTTGTTCCTGTATTTTTT-GTCGAAGA 67
Query 107 AGCTGAAGCAAAATCATTATGGAATACTTGTCTTGTAAAAATCACTCCTAAGTGTGCGTT 166
||||||||||||||||||||| || |||||||| || |||||||||||||| | || ||
Sbjct 68 AGCTGAAGCAAAATCATTATGAAACACTTGTCTAGTTAAAATCACTCCTAAATTTGAATT 127
Query 167 GGATATAATCTGGTGTTGTCTTTGAAAATGGAACC 201
| ||||||| | |||||| ||||||| |||||||
Sbjct 128 GAATATAATTTA-TGTTGTTTTTGAAA-TGGAACC 160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9550872310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5