BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948939
Length=415
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42890.1 | Symbols: ATSCP2, SCP2 | sterol carrier protein 2 ... 621 1e-177
> AT5G42890.1 | Symbols: ATSCP2, SCP2 | sterol carrier protein
2 | chr5:17194197-17196032 REVERSE LENGTH=755
Length=755
Score = 621 bits (336), Expect = 1e-177
Identities = 391/417 (94%), Gaps = 5/417 (1%)
Strand=Plus/Plus
Query 1 TTTCACTACACTGCTC-a-aaaaaaaTGGCAAATACCCAACTCAAATCTGATGCAATCAT 58
|||||||||||||| | | ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 98 TTTCACTACACTGCGCAATAAAAAAATGGCGAATACCCAACTCAAATCCGATGCAATCAT 157
Query 59 GGACATGATGAAGGAACATCTCTCTTCCGACGCTGGGAAAGATCTCACTGAGAAGATCGG 118
||||||||||||||||||||| || ||||||| |||||||| |||| |||||||||||
Sbjct 158 GGACATGATGAAGGAACATCTTTCCACCGACGCCGGGAAAGAGGTCACAGAGAAGATCGG 217
Query 119 TCTTGTTTATCAGATCAACATTGCTCCAAAGAAATTAGGGTTTGAAGAGGTTACTTTCAT 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 218 TCTTGTTTATCAGATCAACATTGCTCCAAAGAAATTAGGGTTTGAAGAGGTTACTTACAT 277
Query 179 CGTTGATCTGAAGAAAGGCGAAGTCACCAAAGGGAAATATGAAGGAGGGAAAGTGGATGC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 CGTTGATCTGAAGAAAGGCGAAGTCACCAAAGGGAAATATGAAGGAGGGAAAGTGGATGC 337
Query 239 GACGTTTTCCTTCAAGGATGATGATTTTGTCAAAGTTGCTACTGGGAAGATGAATCCTCA 298
||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 338 TACGTTCTCCTTCAAGGATGATGATTTTGTCAAAGTTGCCACTGGAAAGATGAATCCTCA 397
Query 299 GATTGCTTTCATCAGGGGTGCGATGAAGATCAAGGGTAGTCTCAGTGCGGCGCAGAAATT 358
||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 398 GATGGCTTTCATTAGGGGTGCGATGAAGATCAAGGGTAGTCTCAGTGCTGCGCAGAAATT 457
Query 359 CACCCCGGACATCTTCCC-AAAGCCTTCAAAGTTGTGAGCAC-AAAAAGAATGGTAT 413
|||||| ||||||||||| ||| ||||||||||||||| ||| ||||||| ||||||
Sbjct 458 CACCCCTGACATCTTCCCTAAA-CCTTCAAAGTTGTGAACACCAAAAAGAGTGGTAT 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19654689859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5