BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948944

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42850.1 | Symbols:  | Thioredoxin superfamily protein | chr...   599    8e-171


> AT5G42850.1 | Symbols:  | Thioredoxin superfamily protein | chr5:17181707-17182623 
REVERSE LENGTH=753
Length=753

 Score =  599 bits (324),  Expect = 8e-171
 Identities = 402/440 (91%), Gaps = 4/440 (1%)
 Strand=Plus/Plus

Query  1    GTCGGAGAAGAAGAAGAAGAACGATGACGTTGAAGAAGCTGGACGCGAATCCATCAACCC  60
            ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| 
Sbjct  33   GTCGGAGAAGAAGAAGAAGAAAGATGACGTTGAAGAAGGTGGACGCGAATCCATCAACCT  92

Query  61   TAGAATCGGCG-TTGGAACAATTGAAATCGGACGAAACCTA-TCGTAGCAAGATCAATTT  118
            | ||||| | | ||  || || ||||||| ||||||| | |  |||||||||||||||||
Sbjct  93   TGGAATC-GAGTTTACAAGAACTGAAATCAGACGAAA-CAAGCCGTAGCAAGATCAATTT  150

Query  119  CATACTCTTCCTCGCCGACAACGATCCCACCACCGGTCAAAGCTGGTGTCCAGACTGTGT  178
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  151  CATACTCTTCCTCGCCGACAATGATCCCACCACCGGTCAAAGCTGGTGTCCAGACTGTGT  210

Query  179  TAGAGCTGAACCTGTGATTTACAAGACTCTAGAGGAATTTCCAGAGGAGGTGAATCTTAT  238
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct  211  TAGAGCTGAACCTGTGATTTACAAGACTCTAGAGGAATTTCCAGAGGAGGTGAAGCTAAT  270

Query  239  TCGTGCATACGCCGGAGATAGACCGACGTGGAGGGCTCCGGGGCATCCGTGGAGAGTCGA  298
            |||||| ||||||||||| |||||||||||| || |||||| |||||| |||||||| ||
Sbjct  271  TCGTGCTTACGCCGGAGACAGACCGACGTGGCGGACTCCGGCGCATCCTTGGAGAGTTGA  330

Query  299  TCCACGGTTTAAGCTAACCGGAGTACCAACTCTTGTTCGTTGGGATGGTGACGCTGTTAA  358
            | | |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  331  TTCTCGGTTTAAACTAACCGGAGTACCAACTCTTGTTCGTTGGGATGGTGACTCTGTTAA  390

Query  359  GGGACGGCTTGAGGATCATCAAGCTCACATTCCTCACTTGATCCTGCCCCTTCTTGCGCC  418
             ||||| ||||| ||||||||||||||| ||||||||||||| || ||||||||||| ||
Sbjct  391  AGGACGTCTTGAAGATCATCAAGCTCACCTTCCTCACTTGATTCTTCCCCTTCTTGCACC  450

Query  419  ATCGACTTGATTTGATCGAT  438
            ||| ||||||||||||||||
Sbjct  451  ATCCACTTGATTTGATCGAT  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21363793325


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5