BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948945

Length=332
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47120.1 | Symbols: ATBI-1, BI-1, ATBI1, BI1 | BAX inhibitor...   363    8e-100


> AT5G47120.1 | Symbols: ATBI-1, BI-1, ATBI1, BI1 | BAX inhibitor 
1 | chr5:19136023-19137942 FORWARD LENGTH=1149
Length=1149

 Score =  363 bits (196),  Expect = 8e-100
 Identities = 218/229 (95%), Gaps = 0/229 (0%)
 Strand=Plus/Plus

Query  70   GTTTATCTGACCTTATGTTGTGCTCGTGTTGCGTCTGCGTTTGGAGCTTACCTCCATGTG  129
            |||||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||||
Sbjct  163  GTTTATTTGACCTTATGTTGTGCTCTTGTGGCGTCTGCCTTTGGAGCTTACCTCCATGTG  222

Query  130  CTCTGGAATATTGGCGGTAATCTTACAACGATTGGATGCGTTGTAACTATGATTTGGCTC  189
            ||||||||||| ||||||| ||||||||||||||||||  ||| ||||||||||||||||
Sbjct  223  CTCTGGAATATCGGCGGTATTCTTACAACGATTGGATGTATTGGAACTATGATTTGGCTC  282

Query  190  CTTTCATGTCCTCCTTATGAACACCAAAAGAGACTTTCTCTTCTGTTTGTGTCTGCTGTT  249
            ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  283  CTTTCATGTCCTCCTTATGAACACCAAAAAAGGCTTTCTCTTCTGTTTGTGTCTGCTGTT  342

Query  250  CTTGAAGGTGCTTCTGTTGGCCCCTTGATCAAAGTGGCAATTGATGTTG  298
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  343  CTTGAAGGTGCTTCTGTTGGCCCCTTGATCAAAGTGGCAATTGATGTTG  391


 Score =  104 bits (56),  Expect = 5e-22
 Identities = 64/68 (94%), Gaps = 0/68 (0%)
 Strand=Plus/Plus

Query  3    aaaaaaaaCGAAACCACAGATGCGTTCTCTTCCTTCTTCGATTCTCAACCTAGTAGCAGA  62
            |||||||||||||| |  ||||||||||||||||||||||||||||||||| ||||||||
Sbjct  34   AAAAAAAACGAAACAATGGATGCGTTCTCTTCCTTCTTCGATTCTCAACCTGGTAGCAGA  93

Query  63   AGCTGGAG  70
            ||||||||
Sbjct  94   AGCTGGAG  101



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15482466692


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5