BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948956

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G26670.1 | Symbols:  | Protein of unknown function (DUF803) ...   379    1e-104
  AT5G50900.1 | Symbols:  | ARM repeat superfamily protein | chr5...   174    5e-43 


> AT3G26670.1 | Symbols:  | Protein of unknown function (DUF803) 
| chr3:9797986-9800910 REVERSE LENGTH=1794
Length=1794

 Score =  379 bits (205),  Expect = 1e-104
 Identities = 237/252 (94%), Gaps = 4/252 (2%)
 Strand=Plus/Plus

Query  7    ATTCTTTAATAACC-ATGGGAGAGTGGGTCATCGGAGCTTTCATCAACATTTTTGGAAGC  65
            |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  204  ATTCTTTAATTACCAATGGGAGAGTGGGTCATCGGAGCTTTCATCAACATTTTTGGAAGT  263

Query  66   GTAGCTATTAATTTCGGCACAAACCTTCTCAAATTGGGACATAATGAGAGAGAAAGGTTA  125
            || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  264  GTTGCTATTAATTTTGGCACAAACCTTCTCAAATTGGGACATAATGAGAGAGAAAGGTTA  323

Query  126  GCTTTACAAGATAATGGCGGAGGAAAGATGCCATTGAAGCCAATTATACATTTTCAGACA  185
            ||  ||||||||   ||||||||||||||||||||||||||||||||||||  |||||| 
Sbjct  324  GCCCTACAAGAT---GGCGGAGGAAAGATGCCATTGAAGCCAATTATACATAATCAGACT  380

Query  186  TGGAGAGTTGGGATCCTTGTCTTTCTTCTTGGGAATTGCCTCAATTTCATTTCGTTTGGC  245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  381  TGGAGAGTTGGGATCCTTGTCTTTCTTCTTGGGAATTGCCTCAATTTCATTTCGTTTGGT  440

Query  246  TATGTTGCTCAG  257
            |||| |||||||
Sbjct  441  TATGCTGCTCAG  452


> AT5G50900.1 | Symbols:  | ARM repeat superfamily protein | chr5:20704804-20706778 
REVERSE LENGTH=1975
Length=1975

 Score =  174 bits (94),  Expect = 5e-43
 Identities = 124/138 (90%), Gaps = 4/138 (3%)
 Strand=Plus/Plus

Query  266  GCAGAGTGAAGTTAACTCAGTCATGGCGAGACTCGATCGTCATGTGAAAGATGCTGAGGT  325
            ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  348  GCAGAGTGAGGTTGATTCAGTCATGGCGAGACTCGATCGTCATGTGAAAGATGCTGAGGT  407

Query  326  TTTGATTACA-AGTGGTCTTCTTCAA-GATAACGGAATCGTCGTTTTTCGATTCTCGATT  383
            |||||||| | |||||||||||  |  ||||||||||||||||||| | |||| ||||||
Sbjct  408  TTTGATTA-AGAGTGGTCTTCTG-ATTGATAACGGAATCGTCGTTTCTGGATTTTCGATT  465

Query  384  TCGTCTAAGAAAGAAGCt  401
            ||||| ||||| ||||||
Sbjct  466  TCGTCGAAGAAGGAAGCT  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20861115835


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5