BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948958
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42790.1 | Symbols: PAF1, ATPSM30, ARS5 | proteasome alpha s... 1367 0.0
> AT5G42790.1 | Symbols: PAF1, ATPSM30, ARS5 | proteasome alpha
subunit F1 | chr5:17159044-17161070 REVERSE LENGTH=1158
Length=1158
Score = 1367 bits (740), Expect = 0.0
Identities = 838/885 (95%), Gaps = 8/885 (1%)
Strand=Plus/Plus
Query 1 agaag-aag-aagaagaagaagCAAAAATGTTCAGAAACCAATACGACACAGATGTGACC 58
||||| ||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 69 AGAAGAAAGCGAGACGAAGAAGCAAAGATGTTCAGAAACCAATACGACACAGATGTTACG 128
Query 59 ACATGGAGTCCAACAGGTCGTTTATTCCAAGTGGAATACGCCATGGAAGCAGTGAAGCAA 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 ACATGGAGTCCAACAGGTCGTTTATTCCAAGTGGAATACGCCATGGAAGCAGTGAAGCAA 188
Query 119 GGATCTGCAGCAATTGGACTCAGATCTCGTTCCCATGTCGTTCTCGCTTGTGTTAACAAA 178
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 189 GGATCTGCAGCAATTGGACTCAGATCTCGTTCTCATGTCGTTCTCGCTTGTGTTAACAAA 248
Query 179 GCTCAATCGGAACTTTCTTCTCATCAGAGGAAGATCTTTAAAGTTGATGACCATATTGGT 238
||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 249 GCTCAATCGGAGCTTTCTTCGCATCAGAGGAAGATCTTTAAAGTCGATGACCATATCGGT 308
Query 239 GTTGCAATCGCTGGTCTCACCGCTGATGGTCGTGTTTTGTCTCGGTATATGAGATCGGAA 298
|||||||||||||||||||| || || |||||||| ||||||||||||||||||||||||
Sbjct 309 GTTGCAATCGCTGGTCTCACAGCCGACGGTCGTGTATTGTCTCGGTATATGAGATCGGAA 368
Query 299 TCGATTAATCACTCGTTTACTTATGAATCTCCTCTTCCTGTTGGTCGTCTCGTTGTCCAT 358
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 369 TCGATTAATCACTCTTTTACTTATGAGTCTCCTCTTCCTGTTGGTCGTCTCGTTGTTCAT 428
Query 359 CTCGCTGATAAGGCTCAGGTCTGTACCCAACGATCATGGAAACGACCCTATGGTGTTGGT 418
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CTTGCTGATAAAGCTCAGGTCTGTACCCAACGATCATGGAAACGACCCTATGGTGTTGGT 488
Query 419 TTACTGGTAGGTGGATTGGATGAGTCTGGTGCCCATCTTTACTACAACTGTCCAAGCGGA 478
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 489 TTGCTGGTAGGTGGATTGGATGAGTCTGGAGCCCACCTTTACTACAACTGTCCCAGCGGA 548
Query 479 AACTACTTCGAGTACCAAGCTTTTGCTATCGGGTCCCGTTCACAAGCAGCAAAGACCTAT 538
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 549 AACTACTTCGAGTACCAAGCTTTTGCTATTGGATCCCGTTCCCAAGCAGCAAAGACCTAT 608
Query 539 CTGGAACGCAGGTTTGAGAGCTTTGGGGATTCTTCAAGAGAAGATCTGATCAAAGATGCT 598
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 609 CTGGAACGCAGGTTTGAGAGCTTTGGGGATTCTTCTAGAGAAGATCTGATCAAAGATGCT 668
Query 599 ATTTTGGCTGTTAGGGAGACATTGCAAGGAGAAACACTGAAGAGTTCTCTCTGCACAGTC 658
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 669 ATTTTGGCTGTTAGGGAGACATTGCAAGGGGAAACACTGAAGAGTTCTCTCTGCACAGTC 728
Query 659 GCTATTCTAGGAGTCGATGAACCGTTCCACTTCTTGGACCAGGAAGCGATACAGAAAGTG 718
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 729 GCTATTCTAGGAGTCGATGAACCGTTCCACTTCCTGGACCAGGAAGCAATACAGAAAGTG 788
Query 719 ATCGACACATTTGAGAAAGTGCCTGAGGAAGAGGAAGGCGAAGGCGAGGCTGGTGAGGGT 778
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 789 ATCGACACATTTGAGAAAGTGCCAGAGGAAGAGGAAGGAGAAGGCGAGGCTGGTGAGGGT 848
Query 779 GAGGCTGAAGCTGCCGCTGCTGCACCAGCAGAACAAGGTGGTGGTGGTGCAGGTGAC--- 835
||||| |||||||||| |||||||||||||||| ||||||||||| ||||||||||
Sbjct 849 GAGGCCGAAGCTGCCGAGGCTGCACCAGCAGAACGAGGTGGTGGTGTTGCAGGTGACCAA 908
Query 836 GT--TG-CTCCAATGGAAATGTAAGGCTTATGTGTGTAACGCTGG 877
| || |||||||||||||||||||||| |||||||||||||||
Sbjct 909 GACGTGGCTCCAATGGAAATGTAAGGCTTGTGTGTGTAACGCTGG 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42799493244
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5