BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948961
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42780.1 | Symbols: AtHB27, HB27, ZHD13 | homeobox protein 2... 863 0.0
> AT5G42780.1 | Symbols: AtHB27, HB27, ZHD13 | homeobox protein
27 | chr5:17154776-17155757 FORWARD LENGTH=982
Length=982
Score = 863 bits (467), Expect = 0.0
Identities = 682/781 (87%), Gaps = 33/781 (4%)
Strand=Plus/Plus
Query 4 TCTTCTTCATCATCATCAATGGATGAGATAATAAAACCAAAGAAAGAAGAAAACTCCAAA 63
||||| ||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 48 TCTTCATCATCATCATCAATGGATGAG---ATAAAACCAAAGAAAGAAGAGAATTCCAAA 104
Query 64 CGTCGTCGTAATGCCACAGCCATTTGCCGTGAAACTGGAGACCACGTCCATTATCCTCCA 123
|| |||||||| | || | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 105 CGACGTCGTAACGTCAAACCCATTTGCCGTGAAACTGGAGACCACGTCCATTATCTTCCA 164
Query 124 ACACGCAGAACCAAACCCAAATCCACGCGTGCTCATCACGCGCCCCCGCCGATCCTCGAA 183
||| ||| |||||| |||||| |||||||| ||||||||||||| || |||||||||||
Sbjct 165 ACATGCAAAACCAAGCCCAAACCCACGCGTACTCATCACGCGCCACCACCGATCCTCGAC 224
Query 184 TCGATCTTAAAAGTTAATCACAAGCCACACTACGGTGAATGCAGGAAGAATCACGCCGCT 243
|| ||||| ||||| | |||||||||||||||| ||||||||||||||||||||||||
Sbjct 225 TCAATCTTCAAAGTCACTCACAAGCCACACTACTACGAATGCAGGAAGAATCACGCCGCT 284
Query 244 GATATCGGAACCACCGCTTACGATGGCTGTGGCGAGTTTGTTAGCTCCACCGGAGAAGAA 303
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 285 GATATCGGAACCACCGCTTACGACGGCTGCGGCGAGTTTGTTAGCTCCACCGGTGAAGAA 344
Query 304 GATTCTTTAAACTGCGCCGCATGCGGCTGTCACCGGAACTTCCACCGTGAAGAGTCCATC 363
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||
Sbjct 345 GATTCTTTAAACTGCGCCGCATGTGGCTGTCACCGTAACTTCCACCGTGAAGAGTTAATC 404
Query 364 CCGGAGAACGGTGGCGTTACTGAGACGGTTCTTGACGTTCTCAAGATTTCTTCGTATCAG 423
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||
Sbjct 405 CCGGAGAACGGCGGCGTTACTGAGACGGTTCTTGAAGTTCTCAAGATTTCATCGTGTCAG 464
Query 424 TTTCGTCGGATCTTTTGCTCACCTTACGGCGGCGGAAAAAGCAAAGGAAAGAAGGAGAGT 483
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||
Sbjct 465 TTTCGTCGGATCTTTTGCTCACCTTACGGCGGTGGAAAAAGCGAAGGAAAGAAGAAGA-- 522
Query 484 TATGGAGGAGATCG-G-GTTGTTAAAG--ATC-GAT--TTGGCGGTGGAGATTTAGCGGC 536
| | |||||| | | ||| | | | ||| ||| || | | || || ||||
Sbjct 523 -A-GAAGGAGAAGGAGAGTTATGGAGGGGATCCGATAATTAAAGATCGA--TT---CGGC 575
Query 537 ggaggaggaggaggaggaggaggTGGGGAGAGTGAAGAGATTGAAGACGAAGTTTACGGC 596
|| | |||||||||||||| || | ||||||||| ||||| |||||||| |||||
Sbjct 576 GGTGC-GGAGGAGGAGGAGG-GG-----ATAGTGAAGAGGTTGAAAACGAAGTTCACGGC 628
Query 597 GGAGCAGACGGAGAAAATGAGGGGTTACGCGGAGAAGCTACGGTGGAAGGTGAGACCTGA 656
|||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 629 GGAGCAAACGGAGAAAATGAGGGATTATGCGGAGAAGCTTCGGTGGAAGGTGAGACCTGA 688
Query 657 GAAG-AGAGAGGAGGTTGAAGAGTTTTGTGTAGAGATTGGAGTGAATCGGAAGAATTTTA 715
|| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 GAGGCAG-GAGGAGGTTGAAGAGTTTTGTGTAGAGATTGGAGTGAATCGGAAGAATTTTA 747
Query 716 GGATTTGGATGAACAATCACAAAGATAAGA--AC--T-GATTAATGATTATTTACCAAAC 770
||||||||||||| |||||||| ||||| | | | ||| ||||||||||||||||||
Sbjct 748 GGATTTGGATGAATAATCACAAGGATAAAATTATAATTGATGAATGATTATTTACCAAAC 807
Query 771 T 771
|
Sbjct 808 T 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5