BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948961 Length=771 Score E Sequences producing significant alignments: (Bits) Value AT5G42780.1 | Symbols: AtHB27, HB27, ZHD13 | homeobox protein 2... 863 0.0 > AT5G42780.1 | Symbols: AtHB27, HB27, ZHD13 | homeobox protein 27 | chr5:17154776-17155757 FORWARD LENGTH=982 Length=982 Score = 863 bits (467), Expect = 0.0 Identities = 682/781 (87%), Gaps = 33/781 (4%) Strand=Plus/Plus Query 4 TCTTCTTCATCATCATCAATGGATGAGATAATAAAACCAAAGAAAGAAGAAAACTCCAAA 63 ||||| ||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 48 TCTTCATCATCATCATCAATGGATGAG---ATAAAACCAAAGAAAGAAGAGAATTCCAAA 104 Query 64 CGTCGTCGTAATGCCACAGCCATTTGCCGTGAAACTGGAGACCACGTCCATTATCCTCCA 123 || |||||||| | || | |||||||||||||||||||||||||||||||||||| |||| Sbjct 105 CGACGTCGTAACGTCAAACCCATTTGCCGTGAAACTGGAGACCACGTCCATTATCTTCCA 164 Query 124 ACACGCAGAACCAAACCCAAATCCACGCGTGCTCATCACGCGCCCCCGCCGATCCTCGAA 183 ||| ||| |||||| |||||| |||||||| ||||||||||||| || ||||||||||| Sbjct 165 ACATGCAAAACCAAGCCCAAACCCACGCGTACTCATCACGCGCCACCACCGATCCTCGAC 224 Query 184 TCGATCTTAAAAGTTAATCACAAGCCACACTACGGTGAATGCAGGAAGAATCACGCCGCT 243 || ||||| ||||| | |||||||||||||||| |||||||||||||||||||||||| Sbjct 225 TCAATCTTCAAAGTCACTCACAAGCCACACTACTACGAATGCAGGAAGAATCACGCCGCT 284 Query 244 GATATCGGAACCACCGCTTACGATGGCTGTGGCGAGTTTGTTAGCTCCACCGGAGAAGAA 303 ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| Sbjct 285 GATATCGGAACCACCGCTTACGACGGCTGCGGCGAGTTTGTTAGCTCCACCGGTGAAGAA 344 Query 304 GATTCTTTAAACTGCGCCGCATGCGGCTGTCACCGGAACTTCCACCGTGAAGAGTCCATC 363 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| Sbjct 345 GATTCTTTAAACTGCGCCGCATGTGGCTGTCACCGTAACTTCCACCGTGAAGAGTTAATC 404 Query 364 CCGGAGAACGGTGGCGTTACTGAGACGGTTCTTGACGTTCTCAAGATTTCTTCGTATCAG 423 ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |||| Sbjct 405 CCGGAGAACGGCGGCGTTACTGAGACGGTTCTTGAAGTTCTCAAGATTTCATCGTGTCAG 464 Query 424 TTTCGTCGGATCTTTTGCTCACCTTACGGCGGCGGAAAAAGCAAAGGAAAGAAGGAGAGT 483 |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| Sbjct 465 TTTCGTCGGATCTTTTGCTCACCTTACGGCGGTGGAAAAAGCGAAGGAAAGAAGAAGA-- 522 Query 484 TATGGAGGAGATCG-G-GTTGTTAAAG--ATC-GAT--TTGGCGGTGGAGATTTAGCGGC 536 | | |||||| | | ||| | | | ||| ||| || | | || || |||| Sbjct 523 -A-GAAGGAGAAGGAGAGTTATGGAGGGGATCCGATAATTAAAGATCGA--TT---CGGC 575 Query 537 ggaggaggaggaggaggaggaggTGGGGAGAGTGAAGAGATTGAAGACGAAGTTTACGGC 596 || | |||||||||||||| || | ||||||||| ||||| |||||||| ||||| Sbjct 576 GGTGC-GGAGGAGGAGGAGG-GG-----ATAGTGAAGAGGTTGAAAACGAAGTTCACGGC 628 Query 597 GGAGCAGACGGAGAAAATGAGGGGTTACGCGGAGAAGCTACGGTGGAAGGTGAGACCTGA 656 |||||| |||||||||||||||| ||| ||||||||||| |||||||||||||||||||| Sbjct 629 GGAGCAAACGGAGAAAATGAGGGATTATGCGGAGAAGCTTCGGTGGAAGGTGAGACCTGA 688 Query 657 GAAG-AGAGAGGAGGTTGAAGAGTTTTGTGTAGAGATTGGAGTGAATCGGAAGAATTTTA 715 || | || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 689 GAGGCAG-GAGGAGGTTGAAGAGTTTTGTGTAGAGATTGGAGTGAATCGGAAGAATTTTA 747 Query 716 GGATTTGGATGAACAATCACAAAGATAAGA--AC--T-GATTAATGATTATTTACCAAAC 770 ||||||||||||| |||||||| ||||| | | | ||| |||||||||||||||||| Sbjct 748 GGATTTGGATGAATAATCACAAGGATAAAATTATAATTGATGAATGATTATTTACCAAAC 807 Query 771 T 771 | Sbjct 808 T 808 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37474673662 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5