BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948975
Length=325
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41350.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 220 5e-57
> AT2G41350.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G21980.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:17231341-17233458 FORWARD LENGTH=1124
Length=1124
Score = 220 bits (119), Expect = 5e-57
Identities = 135/143 (94%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 135 GCAGATGTTACTCAATCGTGTTGGCTACTCTCCTAAGATCAGCCACAGAGAGCTGGTAGA 194
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 872 GCAGATGTTACTCAATCGTGTTGGCTACACTCCTAAGATCAGCCACAGAGAGCTGGTAGA 931
Query 195 AATGGCAGAGCACCGGAAGGAATTGGAGAAGATGGCAAAACCCGTTCTTGATACTCTAAG 254
||||||||||||||||||||||||||| |||||| ||||||| || |||||||||||| |
Sbjct 932 AATGGCAGAGCACCGGAAGGAATTGGACAAGATGACAAAACCAGTCCTTGATACTCTACG 991
Query 255 AAGCTACCAGGACTTGCCTCCGG 277
|||||||||||| || |||||||
Sbjct 992 AAGCTACCAGGATTTACCTCCGG 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15130592449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5