BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg948990

Length=685
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36095.1 | Symbols:  | DNA binding | chr1:13491370-13492725 ...   217    1e-55


> AT1G36095.1 | Symbols:  | DNA binding | chr1:13491370-13492725 
REVERSE LENGTH=906
Length=906

 Score =  217 bits (117),  Expect = 1e-55
 Identities = 242/300 (81%), Gaps = 18/300 (6%)
 Strand=Plus/Plus

Query  156  AAGAA-CTTGATCCAAACAAGAAATATTCAAC-TCATGTTCCTCTTAAACATGGTAGTTG  213
            ||||| |||||||||  |||||||||| | ||  | ||| || |||||||||||||||||
Sbjct  22   AAGAATCTTGATCCAGTCAAGAAATATGC-ACAGCCTGTGCCACTTAAACATGGTAGTTG  80

Query  214  AATGTGTATCTATTGTAAAAACAGTCAAAAATTGTGGAGTTCAACGTAG-AAAACTGCAT  272
             | ||||| ||||||| | || ||||| |||| |||||||| || || | ||||| ||||
Sbjct  81   GAGGTGTAACTATTGTCATAA-AGTCACAAATGGTGGAGTTAAAGGT-GCAAAACAGCAT  138

Query  273  ATTGTTGGAGGTTTTAGGAATGTTACTCAATGTTCTCTAGTTC-TAG-ATCATGTGAAGG  330
            ||| ||||||||||||||||||||||||||||||||||||||| |   || ||| |  ||
Sbjct  139  ATTCTTGGAGGTTTTAGGAATGTTACTCAATGTTCTCTAGTTCCTCCTATTATGAG--GG  196

Query  331  AAGAAGTCAAAA-ATTTCAAGTTTAA-AAAGGCT-AAAGTTAAAGTCAGTACTCAAACGA  387
            ||||| | |||| ||| || | |||| |||  || ||| |||||| || |||||||| ||
Sbjct  197  AAGAAAT-AAAAGATTCCATGCTTAAGAAAA-CTGAAA-TTAAAGCCACTACTCAAATGA  253

Query  388  TGCCACCACCAGCCCCTTTATATTATGATTATGAT-AATGAGGAAGAAGAATTTGAAGTT  446
            ||||||| |||||| ||| |||| | ||||||| | || || ||||||| |  |||||||
Sbjct  254  TGCCACCCCCAGCCACTTCATATGACGATTATGGTGAA-GAAGAAGAAGCAGCTGAAGTT  312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33154537020


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5