BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg948991 Length=935 Score E Sequences producing significant alignments: (Bits) Value AT5G42640.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 994 0.0 > AT5G42640.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr5:17088695-17089597 FORWARD LENGTH=903 Length=903 Score = 994 bits (538), Expect = 0.0 Identities = 793/913 (87%), Gaps = 29/913 (3%) Strand=Plus/Plus Query 21 ATGTCTTCCATCCCAAATAGATTCAATATTTATGGTGGTGATACCTCAAACCATCGTGAA 80 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 1 ATGTCTTCCATCCCAAATAGGTTCAATATTTATGGTGGTGATACCACAAACCATCGTGAA 60 Query 81 TCACTTCCCATCGAAATGAATCACAACTC-CAAAATGGTTCGCTCGATGTTCATTACATC 139 || |||||||||||||||||||||||||| | ||||||||| || |||||||||||||| Sbjct 61 TCGCTTCCCATCGAAATGAATCACAACTCTC-GAATGGTTCGATCCATGTTCATTACATC 119 Query 140 TGATCGCATGAACCATAGAGATTCGTTTTCTTCTCCTCCTTCCCTT-TCTTCTTATCAAA 198 |||||||||||| |||||||||| ||||||||||||||||| | || ||||||||||||| Sbjct 120 TGATCGCATGAATCATAGAGATTTGTTTTCTTCTCCTCCTT-CTTTCTCTTCTTATCAAA 178 Query 199 ATTCACATGTCTCTTCATCTTATGTTGGATTTAATAATTCACATATG----A-C--A--- 248 |||||||| |||||||||||| |||||| |||||||||||||||||| | | | Sbjct 179 ATTCACATATCTCTTCATCTTCTGTTGGGTTTAATAATTCACATATGACTTATCATATGC 238 Query 249 --AAAAGAAATTTTGATTCTATTTCTCGTGCCAATTATTTCCCTACTAAAGAGAAATATC 306 |||||||||| ||||||| |||| ||||| |||||||| |||||||||| | | || Sbjct 239 TGAAAAGAAATTATGATTCTGTTTCCCGTGCTGATTATTTCTCTACTAAAGATCATTCTC 298 Query 307 ATTTTACTCAAGTATCTTTCACTCAAACCATCATAAATAGGTATACAACTATTGTTCCTT 366 ||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| Sbjct 299 ATTTTACTCAAGTATCTTTCACTCAAACCATCACAAATAAGTATACTACTATTGTTCCTT 358 Query 367 CCAATCTATTTAACAATGTCCACTATGACATTGAACGTGTCAAACGTGCCATGGATTCTA 426 ||||| ||||| ||| ||| |||||||| |||| ||||||||||||||||| |||| || Sbjct 359 CCAATATATTTGACACTGTTCACTATGATATTGGTCGTGTCAAACGTGCCATAGATTTTA 418 Query 427 CAAATACTTGGAACCCTATATCTCATCTTCC-AAAGTTTCTTGATAACCAATCCGGGATT 485 ||||| |||||| |||| |||||||||||| ||| | || ||| |||| || |||| Sbjct 419 GAAATATTTGGAATCCTAAATCTCATCTTCCAAAAAAAT-TTAATAGGCAATGCGAGATT 477 Query 486 TTGAAGCCTACCCCTCTAAATATCGTGTTTCCGCACCAAGATTTTCCTGATCGTCAACAT 545 ||||| ||||||||||| |||||||| ||||||||||| |||| |||||||||||||| Sbjct 478 TTGAATCCTACCCCTCTTAATATCGTCTTTCCGCACCAGGATTCAGCTGATCGTCAACAT 537 Query 546 TTAGACATGGTTTCCTTGTCATCAAAGCACAACCGTG-TTTCGCAAGCTGGTCGATCCCT 604 |||||||| ||| || ||||||||||||||||| || |||| |||| |||||||||| | Sbjct 538 TTAGACATTATTTTCTCGTCATCAAAGCACAACCATGTTTTC-CAAGATGGTCGATCCTT 596 Query 605 GAAGAAAATTCCCAAACCAACCAATATTTTTGAAAAAAT-TGGTTCTTATATAGATTCTG 663 |||||||||| || ||||||||||| | |||| |||||| | ||| | ||| |||||| Sbjct 597 GAAGAAAATTTCCGAACCAACCAATCTGTTTG-AAAAATCTAATTC-T-TAT-GATTCTC 652 Query 664 AAAAAGATGAGAAAAAT-GATGAC-GATCATTATGATGGTCGTACACATAGTCTACCGTA 721 || |||||||| ||||| |||| | |||| ||||||||||||||||||||||||||||| Sbjct 653 AAGAAGATGAG-AAAATCGATG-CTTATCAATATGATGGTCGTACACATAGTCTACCGTA 710 Query 722 TAAGAAATTTGGTCCCTATACATGTCCTAAATGTAATGGTGTGTTGGACACCTCTCAAAA 781 || ||||| ||||| ||||||||||| | ||||| |||||||| || || |||||||| Sbjct 711 TACGAAATACGGTCCATATACATGTCCCAGGTGTAACGGTGTGTTTGATACTTCTCAAAA 770 Query 782 ATTTGCTGCACATATGTTATCTCACTACAATAGTGAGACGAACAAAGAAAGAGATCAAAG 841 |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| Sbjct 771 ATTTGCTGCACATATGTTATCTCACTACAATAATGAGACGGACAAAGAAAGAGACCAAAG 830 Query 842 ACTGCGTGCAAGAAATaaaaaaaGATATCGTAAGTTCATGGAAAGTCTCAAAAGATCAAA 901 | | |||||||||||||||||| ||||||||||||| ||||| ||||| |||| |||||| Sbjct 831 ATTTCGTGCAAGAAATAAAAAACGATATCGTAAGTTTATGGACAGTCTTAAAATATCAAA 890 Query 902 ACAGAAGATATGA 914 ||||||||||||| Sbjct 891 ACAGAAGATATGA 903 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45713073770 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5