BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg948997
Length=928
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42610.1 | Symbols: | Protein of unknown function (DUF607) ... 1321 0.0
> AT5G42610.1 | Symbols: | Protein of unknown function (DUF607)
| chr5:17062480-17064047 FORWARD LENGTH=1022
Length=1022
Score = 1321 bits (715), Expect = 0.0
Identities = 844/908 (93%), Gaps = 2/908 (0%)
Strand=Plus/Plus
Query 1 CTCAAGATtctctctctctctTAATGGCTCTACGCAGAGCAATCACTAAACGTCTCATTG 60
||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 5 CTCAAGATTATCTTTCTCTTTTAATGGCTCTACGCAGAGCAATCACTAAACGTCTCATTG 64
Query 61 ACAGTTACAGATCCGATGTAACACAACAACACTCATTTTTCAGACAACTCTCACCATATA 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 65 ACTGTTACAGATCCGATGTAACACAACAACACTCATTTTTCAGACAACTCTCACCCTATA 124
Query 121 AGATGAAGATCTATCGTCAGTACATGACCTCACCGAATGGTCCGAATCTTACAGACCGGA 180
| ||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 125 ACATGAAGATCCATCGTCAGTACATGACTTCACCTAATGGTCCGAATCTTACGGACCGGA 184
Query 181 TTGTCGGGATCCACATCGAGTCCGTTGCTCCTCCCAAACGGGAGGAAACGGCCT-TGAAG 239
|||||||||||| ||||||||||||| |||| || | ||||||||||| || ||| |
Sbjct 185 TTGTCGGGATCCGCATCGAGTCCGTTTCTCCGCCGAGGCGGGAGGAAACA-CCGGTGATG 243
Query 240 GGTTTATCGGTGAGTGAGACAAAGAAGTTGTTGAGGATATATCAAATGGAGAAGGTGAAA 299
|||||||| || |||||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct 244 GGTTTATCAGTTAGTGAGACTAAGAAGTTGTTGAGGCTATATCAAATGGAGAAAGTGAAA 303
Query 300 GCGAGACTCAGAGAGATTCCTAAAAGCTCTGTTTCTTATTGGGAATTTGTTCAGATCTGT 359
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 304 GAGAGACTCAGAGAGATTCCTAAAAGCTCTGTTTCTTATTGGGAATTTATTCAGATCTGT 363
Query 360 TGTGAGAGTTGTGGAAACGATGAGCAAGGTTCTCAAATGGCAAACTCTTTGGATCATTCG 419
|||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||
Sbjct 364 TGTGAGAGTTGTGGGAATGATGAGCAAGGTTCTCAAATGGCTAAGTCTTTGGATCATTCG 423
Query 420 GGATGCGTCGTCGTTTTAGGAGATATAGTATTTCTTCATCCCCATCAGATAGCCAAATCT 479
||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 424 GGATGTGTCGTCGTTTTAGGAGACATAGTTTTTCTTCATCCCCATCAGATAGCCAAGTCT 483
Query 480 ATGGAGGCAATGATCAAGCAAACATCAATACTTCCAAACGATCCAAGGAAAGAAGAGTTA 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 484 ATGGAGGCAATGATCAAGCAAACATCAGTACTTCCAAACGATCCAAGGAAAGAAGAGTTA 543
Query 540 GTTCTGCTTGAGACTACAAAGAAGTGTATTGACATAGAGGCCCAACGCATAGTAAAGGCT 599
|||| ||||| ||||||||||||| |||||||||||||||| | ||| ||||| ||||
Sbjct 544 GTTCAGCTTGCGACTACAAAGAAGAGTATTGACATAGAGGCACGACGTATAGTGCAGGCC 603
Query 600 GAGTTATATTGCGGTCTCGGTTTCCTAGCTGTGCAAACTATAGGCTTTACGCGTCTTACC 659
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 604 GAGTTATATTGTGGTCTCGGTTTCCTAGCTGTGCAAACTATAGGCTTTATGCGTCTTACC 663
Query 660 TTTTGGGAACTAAGCTGGGATGTAATGGAACCCATATGCTTCTTTGTTACATCCATTCAT 719
|||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||
Sbjct 664 TTTTGGGAACTAAGCTGGGACGTAATGGAACCCATCTGCTTCTTTGTCACAACCATTCAT 723
Query 720 TTCATCTTCGGTTACCTCTTTTTTCTTCGGACATCCACGGAACCATCCTTCGAAGGTCTT 779
|||||| |||||||| ||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 724 TTCATCCTCGGTTACATCTTTTTTCTTCGGACATCGACGGAACCATCATTCGAAGGACTT 783
Query 780 TTTCGACAACGGTTTAAGACCAAACAGAAGAAGCTTATGGAGAGGCATGGGTTTGATTTT 839
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 784 TTTCGACAGCGGTTTAAGACCAAACAGAAGAAGCTTATGGAGAGGCATGGATTTGATTTT 843
Query 840 CTGAGGTACAATGAGCTCAACTCCTTGTTCATACCATTTCCGTGTAAATCTCATTATCCG 899
||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||
Sbjct 844 CTGAGGTACAATGAGCTCAACTCTTTGTTCACAACATTTCCGTGTAAATTTCATTATCCG 903
Query 900 GTATAGTT 907
|| |||||
Sbjct 904 GTTTAGTT 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45361434741
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5