BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949002
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42640.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 955 0.0
> AT5G42640.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr5:17088695-17089597 FORWARD LENGTH=903
Length=903
Score = 955 bits (517), Expect = 0.0
Identities = 786/913 (86%), Gaps = 29/913 (3%)
Strand=Plus/Plus
Query 21 ATGTCTTCCATCCCAAATAGATTCAATATTTATGGTGGTGATACCTCAAACCATCGTGAA 80
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGTCTTCCATCCCAAATAGGTTCAATATTTATGGTGGTGATACCACAAACCATCGTGAA 60
Query 81 TCACTTCCCATCGAAATGAATCACAACTC-CAAAATGGTTCGCTCGATGTTCATTACATC 139
|| |||||||||||||||||||||||||| | ||||||||| || ||||||||||||||
Sbjct 61 TCGCTTCCCATCGAAATGAATCACAACTCTC-GAATGGTTCGATCCATGTTCATTACATC 119
Query 140 TGATCGCATGAACCATAGATATTCGTTTCCTTCTCCTCCTTCCCTT-TCTTCTTATCAAA 198
|||||||||||| |||||| ||| |||| |||||||||||| | || |||||||||||||
Sbjct 120 TGATCGCATGAATCATAGAGATTTGTTTTCTTCTCCTCCTT-CTTTCTCTTCTTATCAAA 178
Query 199 ATTCACATGTCTCTTCATCTTATGTTGGATTTAATAATTCACATATG----A-C--A--- 248
|||||||| |||||||||||| |||||| |||||||||||||||||| | | |
Sbjct 179 ATTCACATATCTCTTCATCTTCTGTTGGGTTTAATAATTCACATATGACTTATCATATGC 238
Query 249 --AAAAGAAATTTTGATTCTATTTCTCGTGCCAATTATTTCCCTACTAAAGAGAAATATC 306
|||||||||| ||||||| |||| ||||| |||||||| |||||||||| | | ||
Sbjct 239 TGAAAAGAAATTATGATTCTGTTTCCCGTGCTGATTATTTCTCTACTAAAGATCATTCTC 298
Query 307 ATTTTACTCAAGTATCTTTCACTCAAACCATCATAAATAGGTATACAACTATTGTTCCTT 366
||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct 299 ATTTTACTCAAGTATCTTTCACTCAAACCATCACAAATAAGTATACTACTATTGTTCCTT 358
Query 367 CCAATCTATTTAACAATGTCCACTATGACATTGAACGTGTCAAACGTGCCATGGATTCTA 426
||||| ||||| ||| ||| |||||||| |||| ||||||||||||||||| |||| ||
Sbjct 359 CCAATATATTTGACACTGTTCACTATGATATTGGTCGTGTCAAACGTGCCATAGATTTTA 418
Query 427 CAAATACTTGGAACCCTATATCTCATCTTCCAAAGTT-TCTTGATAACCATTCCGGGATT 485
||||| |||||| |||| ||||||||||||||| | || ||| || | || ||||
Sbjct 419 GAAATATTTGGAATCCTAAATCTCATCTTCCAAAAAAAT-TTAATAGGCAATGCGAGATT 477
Query 486 TTGAAGCCTACCCCTCTAAATATCGTGTTTCCGCAGGAAGATTTTGTTGATCGTCAACAT 545
||||| ||||||||||| |||||||| |||||||| | |||| | |||||||||||||
Sbjct 478 TTGAATCCTACCCCTCTTAATATCGTCTTTCCGCACCAGGATTCAGCTGATCGTCAACAT 537
Query 546 TTAGACATGGTTTCCTTGTCATCAAAGCACAACCGTGTTT-CGCAAGCTGGTCGATCCCT 604
|||||||| ||| || ||||||||||||||||| ||||| | |||| |||||||||| |
Sbjct 538 TTAGACATTATTTTCTCGTCATCAAAGCACAACCATGTTTTC-CAAGATGGTCGATCCTT 596
Query 605 GAAGAAAATTCCCAAACCAACCAATATTTTTGAAAAAAT-TGGTTCTTATATAGATTCTG 663
|||||||||| || ||||||||||| | ||||||||| | | ||||||| ||||||
Sbjct 597 GAAGAAAATTTCCGAACCAACCAATCTGTTTGAAAAA-TCTAATTCTTAT---GATTCTC 652
Query 664 AAAAAGATGAGAAAAAT-GATGACG-ATCATTATGATGGTCGTACACATAGCCTACCGTA 721
|| |||||||||||| | |||| | |||| |||||||||||||||||||| ||||||||
Sbjct 653 AAGAAGATGAGAAAA-TCGATG-CTTATCAATATGATGGTCGTACACATAGTCTACCGTA 710
Query 722 TAAGAAATTTGGTCCCTATACATGTCCTAAATGTAATGGTGTGTTGGACACCTCTCAAAA 781
|| ||||| ||||| ||||||||||| | ||||| |||||||| || || ||||||||
Sbjct 711 TACGAAATACGGTCCATATACATGTCCCAGGTGTAACGGTGTGTTTGATACTTCTCAAAA 770
Query 782 ATTTGCTGCACATATGTTATCTCACTATAATAGTGAGACGAACAAAGAAAGAGATCAAAG 841
||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |||||
Sbjct 771 ATTTGCTGCACATATGTTATCTCACTACAATAATGAGACGGACAAAGAAAGAGACCAAAG 830
Query 842 ACTGCGTGCAAGAAATaaaaaaaGATATCGTAAGTTCATGGAAAGTCTCAAAAGATCAAA 901
| | |||||||||||||||||| ||||||||||||| ||||| ||||| |||| ||||||
Sbjct 831 ATTTCGTGCAAGAAATAAAAAACGATATCGTAAGTTTATGGACAGTCTTAAAATATCAAA 890
Query 902 ACAGAAGATATGA 914
|||||||||||||
Sbjct 891 ACAGAAGATATGA 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5