BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949003

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01400.1 | Symbols: ESP4 | HEAT repeat-containing protein | ...   183    9e-46


> AT5G01400.1 | Symbols: ESP4 | HEAT repeat-containing protein 
| chr5:162550-171072 REVERSE LENGTH=4657
Length=4657

 Score =  183 bits (99),  Expect = 9e-46
 Identities = 115/123 (93%), Gaps = 0/123 (0%)
 Strand=Plus/Plus

Query  257  GGACCGGTTGATCAGTGCTCCTAAAGAGATAGAAGGTGGAGGTCGGGCAGCCAAAGCAAA  316
            ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct  873  GGACCGGTTGACCAGTGCTCTTAAAGAGATAGAAGGTGGAGGTCAGGCAGCCAAAGCGAA  932

Query  317  AGATCTCTTTTACAAGACTAACGGAAGCACTCAAGATAAAGACAGTGTAGAGGATACCAA  376
            ||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||
Sbjct  933  AGATCTCTTTTACAAGACTAACGGAAGCATTCAGGACAAAGACAGTGTAGAAGATACCAA  992

Query  377  GGT  379
            |||
Sbjct  993  GGT  995



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20710312588


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5