BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949009

Length=1072
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36675.1 | Symbols:  | glycine-rich protein | chr1:13867568-...   340    1e-92


> AT1G36675.1 | Symbols:  | glycine-rich protein | chr1:13867568-13869490 
FORWARD LENGTH=807
Length=807

 Score =  340 bits (184),  Expect = 1e-92
 Identities = 269/310 (87%), Gaps = 5/310 (2%)
 Strand=Plus/Plus

Query  174  TCAGCTGTTCCAAACTATCGTCCATATCATGGATCGATGATGTCGTATTCATCTCAAGCA  233
            |||||| || ||||| | |||||||||||||||||||| |||||    || |||||||||
Sbjct  7    TCAGCTATTACAAACCACCGTCCATATCATGGATCGATTATGTCACCGTCGTCTCAAGCA  66

Query  234  CCCTCTTATTCTTCTGCTCCAATGGGTAATGAAACTAATAC-AAGTGTTGGAACAACTGA  292
            ||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||
Sbjct  67   CCCTCTTATTCTTCTACTCCAATGGGTAATGAAACTAATACGAA-TGTTGGAGCAACTGA  125

Query  293  ATTCCCCGAATTTTCTACACAAATGGCTCTTGGTGCTATGAGCGGTGTTCATGAAGCCAT  352
            |||||| |||||||||||||||||||||||||||| |||||| |||||||| ||| | ||
Sbjct  126  ATTCCCGGAATTTTCTACACAAATGGCTCTTGGTGTTATGAGTGGTGTTCACGAAACTAT  185

Query  353  TCCAAATGAAGAGGATTCAACTCCTGCTCGTCCGAGAAGCTTTAAATGGACCACTGAACA  412
            ||||||||||||||||| ||||  |  || | |||||||||  |||||||||||||| ||
Sbjct  186  TCCAAATGAAGAGGATTTAACTTGTAATCATTCGAGAAGCTCCAAATGGACCACTGATCA  245

Query  413  AA-TTATGGTGCTACTGAATGGGTGGATTAAATATGGAACATATAGCGTTTTTGGCAGAA  471
            || || |||||||||||| | ||||||||||||||| |||| ||||  |  |||| ||||
Sbjct  246  AAATT-TGGTGCTACTGAGTAGGTGGATTAAATATG-AACAAATAGTATCGTTGGTAGAA  303

Query  472  ACCAAAAAGG  481
            ||||||||||
Sbjct  304  ACCAAAAAGG  313



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 52509770070


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5