BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949017
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42500.1 | Symbols: | Disease resistance-responsive (dirige... 817 0.0
AT5G42510.1 | Symbols: | Disease resistance-responsive (dirige... 756 0.0
AT3G58090.1 | Symbols: | Disease resistance-responsive (dirige... 115 5e-25
> AT5G42500.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr5:16994240-16994930 REVERSE
LENGTH=691
Length=691
Score = 817 bits (442), Expect = 0.0
Identities = 536/581 (92%), Gaps = 7/581 (1%)
Strand=Plus/Plus
Query 15 ACTAACATGGCTAAACGTTttctgattcttcttcctctcttctcaactattcttcttctt 74
||||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||
Sbjct 9 ACTAACATGGCTAAACGTTTTCTCCTTCTTCTTCCTCTTTTGTCAACTATTCTACTTCTT 68
Query 75 GCCGTAACCGTTACAGAATCCGAAGCTTACTCGACAACAACGCCGTTTCAAGGCTACAAG 134
||||| ||||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 69 TCCGTATCCGTTACAGAATCCGAAGCTTACTCCACAACAAAGCCGTGTCAAGGCTACAAG 128
Query 135 CCGGAGT-GCTTCACTCACCTCCACTTTTACTTCCATGACGTCATCACCGGTGACAAACC 193
||||| | ||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 129 CCGGA-TAAATTCACCCACCTCCACTTTTACTTCCATGACGTCATCTCCGGTGACAAACC 187
Query 194 TACCGCCATCAAAGTCGCCGAAGCCCGCCCAACAAACTCCCT-CAACGTCAATTTTGGCG 252
||||||| ||||||| || |||||||||| |||||||| ||| |||||||||||||||||
Sbjct 188 TACCGCCGTCAAAGTTGCGGAAGCCCGCCGAACAAACT-CCTCCAACGTCAATTTTGGCG 246
Query 253 TGATTATGATCGCTGATGATCCGTTAACAGAAGGACCTGACCCGAGTTCAAAGGTAGTGG 312
||||||||||||||||||||||||| || |||||||| |||||||| ||||||| |||||
Sbjct 247 TGATTATGATCGCTGATGATCCGTTGACCGAAGGACCAGACCCGAGCTCAAAGGAAGTGG 306
Query 313 GAAGAGCTCAGGGGATGTACGCATCGACGGCCATGAAGGACAT-AGTCTTCACAATGGTA 371
|||||||||| ||||||||||||| ||| ||||||||| |||| || ||||||||||||
Sbjct 307 GAAGAGCTCAAGGGATGTACGCATTGACAGCCATGAAGAACATAAG-CTTCACAATGGTC 365
Query 372 TTTAACTTGGCTTTCACGGAAGGAGAGTTTAATGGAAGCACCCTCGCGATGTATGGCCGG 431
|||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 366 TTTAACTTGGCTTTTACGGCGGGAGAGTTTAATGGAAGCACCGTCGCGATGTATGGACGG 425
Query 432 AATGATATATTTTCGAAGGTGAGAGAGATGCCGATTATTGGAGGAACCGGTGCTTTCAGG 491
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 426 AATGAGATATTTTCGAAGGTGAGAGAGATGCCAATTATTGGAGGAACCGGTGCTTTCAGG 485
Query 492 TTTGCTAGAGGGTATGCACAGGCCAAGACTTATAAGATTGTTGGTCTAGATGCCGTGGTC 551
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 486 TTTGCTAGAGGCTATGCACAGGCCAAGACTTATAAGGTTGTTGGTCTAGATGCCGTGGTC 545
Query 552 GAGTATAATGTCTTCATTTGGCATTAATTATTTCGCATATT 592
|||||||||||||||||||||||||||| |||| |||||||
Sbjct 546 GAGTATAATGTCTTCATTTGGCATTAATCATTT-GCATATT 585
> AT5G42510.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr5:16998268-16998816 REVERSE
LENGTH=549
Length=549
Score = 756 bits (409), Expect = 0.0
Identities = 511/559 (91%), Gaps = 11/559 (2%)
Strand=Plus/Plus
Query 21 ATGGCTAAACGTTttctgattcttcttcctctcttctcaactattcttcttcttGCCGTA 80
|||||||||||||||||| ||||||||||||| || ||| |||||||||||||||||||
Sbjct 1 ATGGCTAAACGTTTTCTGCTTCTTCTTCCTCTTTTGTCATCTATTCTTCTTCTTGCCGTG 60
Query 81 ACCGTTACAGAATCCGAAGCTTACTCGACAACAACGCCGTTTCAAGGCTACAAGCCGGAG 140
||| | | | | ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 61 TCCG-T-C---A--C--AGCTTACTCCACAACAACGCCGTATCAAGGCTACAAGCCGGAG 111
Query 141 TGCTTCACTCACCTCCACTTTTACTTCCATGACGTCATCACCGGTGACAAACCTACCGCC 200
||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 112 AAATTCACCCACCTCCACTTCTACTTCCATGACGTCATCTCCGGTGACAAACCTACCGCC 171
Query 201 ATCAAAGTCGCCGAAGCCCGCCCAACAAACTCCCTCAACGTCAATTTTGGCGTGATTATG 260
||||||| ||||||||||||||||||| | ||||||||||||| |||||||||||||||
Sbjct 172 GTCAAAGTTGCCGAAGCCCGCCCAACAACCACCCTCAACGTCAAGTTTGGCGTGATTATG 231
Query 261 ATCGCTGATGATCCGTTAACAGAAGGACCTGACCCGAGTTCAAAGGTAGTGGGAAGAGCT 320
||||||||||||||||| || |||||||| |||||||| ||||||| |||||||||||||
Sbjct 232 ATCGCTGATGATCCGTTGACCGAAGGACCAGACCCGAGCTCAAAGGAAGTGGGAAGAGCT 291
Query 321 CAGGGGATGTACGCATCGACGGCCATGAAGGACATAGTCTTCACAATGGTATTTAACT-T 379
||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |
Sbjct 292 CAGGGGATGTACGCATCAACAGCCATGAAGGACATAGTCTTCACAATGGTCTTTAACTAT 351
Query 380 GGCTTTCACGGAAGGAGAGTTTAATGGAAGCACCCTCGCGATGTATGGCCGGAATGATAT 439
| |||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 352 -GTTTTCACGGCAGGAGAGTTTAATGGAAGCACCATCGCGGTGTATGGACGGAATGATAT 410
Query 440 ATTTTCGAAGGTGAGAGAGATGCCGATTATTGGAGGAACCGGTGCTTTCAGGTTTGCTAG 499
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 411 ATTTTCGAAGGTGAGAGAGTTGCCGATTATTGGAGGAACTGGTGCTTTCAGGTTTGCTAG 470
Query 500 AGGGTATGCACAGGCCAAGACTTATAAGATTGTTGGTCTAGATGCCGTGGTCGAGTATAA 559
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGGCTATGCACTGCCCAAGACTTATAAGATTGTTGGTCTAGATGCCGTGGTCGAGTATAA 530
Query 560 TGTCTTCATTTGGCATTAA 578
|||||||||||||||||||
Sbjct 531 TGTCTTCATTTGGCATTAA 549
> AT3G58090.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr3:21512319-21514281 REVERSE
LENGTH=1044
Length=1044
Score = 115 bits (62), Expect = 5e-25
Identities = 170/220 (77%), Gaps = 15/220 (7%)
Strand=Plus/Plus
Query 372 TTT-AACTTGGCTTTCACGGAA-GGAGAGTTTAATGGAAGCACCCTCG-CGATGTATGGC 428
||| ||||| | |||||| || || || ||| || |||||| | | | |||||||||
Sbjct 671 TTTCAACTTTGTTTTCAC-AAAGGGTGAATTTTCCGGCAGCACCGT-GTCCATGTATGGC 728
Query 429 CGGAATGATATATTTTCGAAGGTGAGAGAGATGCCGATTATTGGAGGAACCGGTGCTTTC 488
|||||| ||||||||||||||||||||||||||||| || ||||| || || || |||
Sbjct 729 CGGAATCCGATATTTTCGAAGGTGAGAGAGATGCCGATCATCGGAGGTACTGGAGCATTC 788
Query 489 AGGTTTGCTAGAGGGTATGCACAGGCCAAGACTTATAAGATTGT-TGGT-CTAG---A-- 541
||||| | ||||| |||||||| |||||||||| || | || | | | || |
Sbjct 789 AGGTTCGGAAGAGGATATGCACAAGCCAAGACTTTTACG-TTCAATACTACCAGTGGAAA 847
Query 542 TGCCGTGGTCGAGTATAATGTCT-TCATTTGGCATTAATT 580
||| |||||| |||||||||| | | ||||||||||||||
Sbjct 848 TGCTGTGGTCAAGTATAATGTTTAT-ATTTGGCATTAATT 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5